Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O01
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   5e-25
Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    30   2.7  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (268), Expect = 5e-25
 Identities = 54/76 (71%), Positives = 62/76 (81%)
 Frame = +2

Query: 200 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 379
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 380 HGQVIYTRATKGDDPV 427
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical
           protein T05C12.4 protein.
          Length = 630

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 641 AIALFVTIISCN-RQVTTTIAFILCFRFRGRCG 736
           A +LF ++ISC+   V  TI F+ C RFRGRCG
Sbjct: 48  AASLF-SLISCSFGLVIFTIVFLTC-RFRGRCG 78


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 85  EGREGFGXTASKNTEEEGRIRWRQSQEEEVVQRK 186
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 682 SYHHNCIHFMFQVQGE 729
           SYHH C+H + QV G+
Sbjct: 108 SYHHYCLHLIVQVYGQ 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,691
Number of Sequences: 27780
Number of extensions: 343802
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)