Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N24
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.084
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.084
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +3

Query: 222 PXPTTPXPPPXXHKTX-TPXTXXPPTPSXXXXPIXPPHPXP 341
           P    P P P  H++   P    PP PS    P  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 855 RHXPSXPXXXPPPPXPPXPPXPQ 923
           R  P  P   PPP  PP  P  Q
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +1

Query: 220 PXXXQXPXPPPPXTKXXPPXPPXXPPPPXXXPLXPP 327
           P     P   P   +   P  P   PPP   P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +1

Query: 220 PXXXQXPXPPPPXTKXXPPXPPXXPPPPXXXPLXPPPTPXPH 345
           P   Q   PP P     P  PP  PP      +   P    H
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIH 72



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +1

Query: 826 PSXPPXXSXLATHHPPPXXPXPPPXPXXPP 915
           P   P  S  A     P  P   P P  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 885 PPPPXPPXPPXPQXTQDNXR 944
           PP P PP PP      D+ +
Sbjct: 338 PPKPAPPPPPPSSSGPDSAK 357



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 271 PPXPPXXPPPP 303
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 15/61 (24%), Positives = 16/61 (26%)
 Frame = +1

Query: 154 PPTPXPXQXHHNPKNXXHXXTPPXXXQXPXPPPPXTKXXPPXPPXXPPPPXXXPLXPPPT 333
           P  P P                P     P PP P  +  P   P     P   P   PP 
Sbjct: 81  PRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGN-NRPVYIPQPRPPH 139

Query: 334 P 336
           P
Sbjct: 140 P 140


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 528 HXNPXPPXTPPP 563
           H +P PP TP P
Sbjct: 464 HHHPHPPETPGP 475


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 298 PPXXXPLXPPPTPXP 342
           PP   P+ P P+P P
Sbjct: 437 PPSSNPVSPVPSPDP 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.144    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,291
Number of Sequences: 438
Number of extensions: 7774
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)