Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_N23
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 42 1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.004
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.027
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.035
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.061
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.081
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 31 0.25
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.57
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 5.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPP 530
P PPP P P PP P PP PP PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 612 PXXPPXXXPGPPPXPPPXXXXXPPPPPXXGGXXXXXP 502
P P P PPP P PPPPP G P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = -3
Query: 600 PXXXPGPPPXPPPXXXXX-PPPPPXXGGXXXXXPXXXXGAXPXXXXXXXKXXXPPP 436
P P P P PPP PPPPP G P P + P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.004
Identities = 20/52 (38%), Positives = 20/52 (38%)
Frame = -2
Query: 676 GXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXRG 521
G P P P PVPP PP P PP PP PP P P G
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPS-VGVPPVPPP--STAPPVPTPSAG 1225
Score = 32.7 bits (71), Expect = 0.081
Identities = 25/102 (24%), Positives = 26/102 (25%)
Frame = -2
Query: 742 SPGXGAXXSLPFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPP 563
+P P P G P P P PVP PP P P P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS--VAAPPVPA 1173
Query: 562 XXXXXPPPPPPXRGXXXXXPXXXXRGPXXXXXXXXXXPXXPP 437
PP P P G P P P PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPP--PSEAPPVPKPSVGVPPVPPP 1213
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = -2
Query: 676 GXPSPPPPFCXXXPVP-PXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXRGXXXXXP 503
G P PPP PVP P PP PP PP P P P P + P
Sbjct: 1187 GVPPVPPP-SEAPPVPKPSVGVPPVPPPS--TAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 31.5 bits (68), Expect = 0.19
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Frame = -2
Query: 739 PGXGAXXSLPFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXP--PGXXXXPPXXP 566
P +P S P G PS PPP P P P P PP
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 565 PXXXXXPPPPP 533
P P P P
Sbjct: 1097 PSVAAPPVPKP 1107
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXRGXXXXXPXXXX 491
P P P PVPP PP P PP P P P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPS-AGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256
Query: 490 RGP 482
P
Sbjct: 1257 PSP 1259
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/68 (23%), Positives = 17/68 (25%)
Frame = -2
Query: 742 SPGXGAXXSLPFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPP 563
+P P P P P P PVP PP P P P
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Query: 562 XXXXXPPP 539
P P
Sbjct: 1138 GAPPVPKP 1145
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = -2
Query: 676 GXPSPPPPFCXXXPVP-PXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPP 533
G P P P PVP P PP P PP P P P P
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPV--PAPSGAPPVPKPSVAAPPVPVP 1136
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = -2
Query: 712 PFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPP 533
P S P G P P P PVP P P PP P PP P
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAP-SGIPPVPKPSVAAPPVPKPSVAVPPV--PAPSGAPPVPK 1125
Query: 532 P 530
P
Sbjct: 1126 P 1126
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/47 (27%), Positives = 14/47 (29%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPP 530
P P P P+P P G PP P P P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPP 533
P P P P+P PP P P PPP P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPP 536
PS PP P P P PP P PP PPPP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 34.7 bits (76), Expect = 0.020
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = -2
Query: 670 PSPPPPFCXXXP---VPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPP 530
P+PP P P PP PP P P PP PPP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 34.3 bits (75), Expect = 0.027
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -2
Query: 712 PFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPP 533
P S P P+ PP P P PP P PP P PP PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 30.7 bits (66), Expect = 0.33
Identities = 20/79 (25%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Frame = -2
Query: 667 SPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXP--PPPPPXRGXXXXXPXXX 494
S PP P P PP P PP P P PP P P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Query: 493 XRGPXXXXXXXXXXPXXPP 437
+ P P PP
Sbjct: 181 VKSPPSAPSLPSAVPPMPP 199
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTP---PXXPPGXXXXPPXXPPXXXXXP---PPPPP 530
PS PPP P P P PP P PP P PP PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.3 bits (75), Expect = 0.027
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTP-PXXPPGXXXXPPXXPPXXXXXPPPPPP 530
P PP PP P P PP PP PP P PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.3 bits (65), Expect = 0.43
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXR 524
P+PPPP VPP PP P G PP P P P R
Sbjct: 1705 PTPPPP---PMSVPPPPSAPP-MPAGPPSAPPPPLPASSAPSVPNPGDR 1749
Score = 30.3 bits (65), Expect = 0.43
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -3
Query: 612 PXXPPXXXPGPPPXPP-PXXXXXPPPPP 532
P PP P PP PP P PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.035
Identities = 23/71 (32%), Positives = 25/71 (35%)
Frame = -2
Query: 742 SPGXGAXXSLPFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPP 563
+P SLP S P PS P P+PP P P G PP PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPS-APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP-LPP 471
Query: 562 XXXXXPPPPPP 530
PP P P
Sbjct: 472 AAPAPPPAPAP 482
Score = 31.1 bits (67), Expect = 0.25
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = -2
Query: 667 SPPPPFCXXXPVPPXXXT--PPXXPPGXXXXPPXXPPXXXXXPPPPPPXR 524
SPP P P T PP PP PPPPPP R
Sbjct: 270 SPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSR 319
Score = 30.7 bits (66), Expect = 0.33
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -2
Query: 667 SPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXRGXXXXXP 503
+PP P P PP PP P PP P PP G P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 30.3 bits (65), Expect = 0.43
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXX--------TPPXXPPGXXXXPPXXPPXXXXXPPPPPP 530
P PPPP PP PP P PP PPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Frame = -2
Query: 670 PSPPPP---FCXXXPVPPXXXTPPXXPPGXXXX------PPXXPPXXXXXPPPPPP 530
P PPPP P+PP + P PP PP PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 29.5 bits (63), Expect = 0.75
Identities = 17/67 (25%), Positives = 17/67 (25%)
Frame = -2
Query: 637 PVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXRGXXXXXPXXXXRGPXXXXXXXX 458
PVP PP PP P P PP PP P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 457 XXPXXPP 437
P P
Sbjct: 476 PPPAPAP 482
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/63 (28%), Positives = 21/63 (33%)
Frame = -2
Query: 718 SLPFSFXPGXXXXXGXPSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPP 539
S+P S P P+PPP P +PP PP P PP
Sbjct: 235 SIPSSRPPERVPSLSAPAPPP---IPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPP 291
Query: 538 PPP 530
PP
Sbjct: 292 LPP 294
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -3
Query: 603 PPXXXPGPPPXPPPXXXXXPPPP 535
P P PPP PPP PP
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPP 268
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Frame = -2
Query: 631 PPXXXTPPXXPPGXXXXPPXXPPXXXXXPPP--PPPXRGXXXXXPXXXXR 488
P PP P PP P PP PPP G P R
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.061
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 503 GXXXXXPPXXGGGGGXXXXXGGGXGGGPGXXXGGXXG 613
G P GGG G GG GGGPG GG G
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 533 GGGGGXXXXXGGGXGGGPGXXXGGXXG 613
GGG G GG GGGPG GG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Score = 30.3 bits (65), Expect = 0.43
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Frame = +2
Query: 503 GXXXXXPPXXGGGGGXXXXXG--------GGXGGGPGXXXGGXXG 613
G PP GG GG G GG GGGPG GG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 29.1 bits (62), Expect = 1.00
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 503 GXXXXXPPXXGGGGGXXXXXGGGXGGGPGXXXG 601
G P GGG G GG GGGPG G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 531 GGGGGGXXXXXGGXXGGXXXXPGGXXGGV 617
GG GGG GG GG PGG GG+
Sbjct: 224 GGFGGGPGGFEGGP-GGFGGGPGGFGGGL 251
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.081
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 603 PPXXXPGPPPXPPPXXXXXPPPPPXXG 523
PP P PPP P PPPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -2
Query: 634 VPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPP 533
+PP PP PPG PP PP PPPPP
Sbjct: 4 LPPGNPPPPPPPPGFE--PPSQPP-----PPPPP 30
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.1 bits (67), Expect = 0.25
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -3
Query: 612 PXXPPXXXPGPP-PXPPPXXXXXPPPPP 532
P P P PP P P P PPPPP
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPP 748
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 533 GGGGGXXXXXGGGXGGGPGXXXGGXXGXXXXR 628
GG GG GG GGG G GG G R
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGAR 54
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 533 GGGGGXXXXXGGGXGGGPGXXXGGXXGXXXXR 628
GG G GGG GG G GG G R
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGR 50
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = -2
Query: 670 PSPPPPFCXXX--PVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPP 530
PS PF P+PP PP P P P PP PP
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPP 527
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -2
Query: 670 PSPPPPFCXXX-PVPPXXXTPPXXPPGXXXXPPXXPPXXXXXPPPPPPXRG 521
P PP F P+PP P P PP PP P P P G
Sbjct: 492 PLPPTTFAPPGVPLPPIPGAP-GMPNLNMSQPPMVPPGMALPPGMPAPFPG 541
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 613 PPXXPPGXXXXPPXXPPXXXXXPPPPPP 530
PP P P P PPPPPP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPP 195
Score = 23.4 bits (48), Expect(2) = 6.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 588 PGPPPXPPP 562
P PPP PPP
Sbjct: 236 PAPPPPPPP 244
Score = 21.0 bits (42), Expect(2) = 6.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -3
Query: 570 PPPXXXXXPPPPP 532
PPP PP PP
Sbjct: 274 PPPATPSQPPRPP 286
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 521 PPXXGGGGGXXXXXGGGXGGGPG 589
PP G GG GG G GPG
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPG 98
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Frame = -2
Query: 670 PSPPPPFCXXXPVPPXXXTPPXXPPGXXXXPPXXPPXXXXXP--PPPPPXRGXXXXXP 503
P PPPP PP PP PP P P P P G P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPA---GPPAGATAISGNPGMPAPVPLTGKETAVP 1936
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 536 GGGGXXXXXGGGXGGGPGXXXGGXXGXXXXR 628
GGG GG GG G GG G R
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGGFRGR 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,098,813
Number of Sequences: 5004
Number of extensions: 15104
Number of successful extensions: 373
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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