Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N20
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              29   0.076
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              29   0.076
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.31 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   0.54 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   8.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   8.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   8.8  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 556 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECTPIFIES*LLK 687
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 556 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECTPIFIES*LLK 687
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 788 HGNNTYEYLHYLN*NGHFKILCIFMQNY*KYHLNLSNYDSMNIGVHSEIFCFWNFP 621
           H NN Y   +Y N   ++        NY K + N+ N + + + V   I+C  NFP
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNNY--NNYKKLYYNIINIEQIPVPVPVPIYC-GNFP 376


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -3

Query: 782 NNTYEYLHYLN*NGHF----KILCIFMQNY*KYHLNLSNYDSMNIGVHSEIFCFWNFP 621
           +N Y+Y +Y N N ++         +  NY K + N++  + + + V   I+C  NFP
Sbjct: 319 SNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYC-GNFP 375


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 264 KYRRPSDSSFENRRRAARSK 323
           KYR  S   F +RR   RSK
Sbjct: 291 KYRETSKERFRDRRERERSK 310


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 246 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQS 353
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 788 HGNNTYEYLHYLN*N 744
           H NN Y+ L Y N N
Sbjct: 313 HNNNNYKKLQYYNIN 327


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 788 HGNNTYEYLHYLN*N 744
           H NN Y+ L Y N N
Sbjct: 324 HNNNNYKKLQYYNIN 338


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 788 HGNNTYEYLHYLN*N 744
           H NN Y+ L Y N N
Sbjct: 324 HNNNNYKKLQYYNIN 338


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 788 HGNNTYEYLHYLN*N 744
           H NN Y+ L Y N N
Sbjct: 313 HNNNNYKKLQYYNIN 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,105
Number of Sequences: 438
Number of extensions: 6691
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)