Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_N15
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 81 4e-15
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 81 4e-15
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 81 4e-15
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 81 4e-15
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 81 4e-15
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 81 4e-15
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 81 4e-15
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 81 4e-15
BC141863-1|AAI41864.1| 407|Homo sapiens TPRX1 protein protein. 36 0.22
AK097640-1|BAC05130.1| 411|Homo sapiens protein ( Homo sapiens ... 36 0.22
S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1... 31 4.7
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 31 4.7
AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collag... 31 4.7
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTN 94
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 94
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 94
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 94
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 94
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 94
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 94
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 81.0 bits (191), Expect = 4e-15
Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +1
Query: 127 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVXGQEQXYXPN-XV*LCVSPTXM 303
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+ + + P + + V+ +
Sbjct: 8 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 67
Query: 304 YMPGGYLRLKGP-IGWAXXSIXXPLLG-XXGLTN 399
Y R++G I A + P G GLTN
Sbjct: 68 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTN 101
>BC141863-1|AAI41864.1| 407|Homo sapiens TPRX1 protein protein.
Length = 407
Score = 35.5 bits (78), Expect = 0.22
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -1
Query: 625 GFLXGGXXGAXXNPLXXPKXGPXGGGXPXPQKXXXXGPXXGXXXFSPRELLGPVKGXNPI 446
G + G G P+ P GP G P P GP G P + GP+ G PI
Sbjct: 205 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPG---LIPGPIPGPISGPGPI 261
Query: 445 XXP 437
P
Sbjct: 262 IGP 264
Score = 34.7 bits (76), Expect = 0.38
Identities = 23/82 (28%), Positives = 28/82 (34%)
Frame = -1
Query: 682 PXGGPXXXXXXXWGXXKRXGFLXGGXXGAXXNPLXXPKXGPXGGGXPXPQKXXXXGPXXG 503
P GP G + G G P+ P GP G P P GP G
Sbjct: 170 PFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPISGPISGPNPGPIPGPIPGPISG 229
Query: 502 XXXFSPRELLGPVKGXNPIXXP 437
+P + GP+ G NP P
Sbjct: 230 P---NPGPIPGPISGPNPGLIP 248
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -1
Query: 601 GAXXNPLXXPKXGPXGGGXPXPQKXXXXGPXXGXXXFS-PRELLGPVKGXNPIXXP 437
G P P GP G P P GP G P + GP+ G NP P
Sbjct: 165 GPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPISGPISGPNPGPIP 220
>AK097640-1|BAC05130.1| 411|Homo sapiens protein ( Homo sapiens
cDNA FLJ40321 fis, clone TESTI2030860. ).
Length = 411
Score = 35.5 bits (78), Expect = 0.22
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -1
Query: 625 GFLXGGXXGAXXNPLXXPKXGPXGGGXPXPQKXXXXGPXXGXXXFSPRELLGPVKGXNPI 446
G + G G P+ P GP G P P GP G P + GP+ G PI
Sbjct: 209 GPISGPISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPG---LIPGPIPGPISGPGPI 265
Query: 445 XXP 437
P
Sbjct: 266 IGP 268
>S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1
chain protein.
Length = 1186
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -3
Query: 737 KKKPXPPGXXFFXXPPXPXXGGPRFXXXXXXGVXKK--XGFFGGXGXGGPXKPP 582
K +P PPG PP P GPR +K GF G G GP PP
Sbjct: 698 KGEPGPPGSEGLPGPPGP--AGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPP 749
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = +3
Query: 450 GLXPLTGPKSSRGEKXXXPXXGPXXXXFW-GXGXPPPXGPXFGXXRGFXXAPXXPPXKKP 626
GL PL GPK E P GP G PPP G F A PP P
Sbjct: 17 GLPPLPGPKGGF-EPGPPPAPGPGAGLLAPGPPPPPPVGSMGALTAAFPFAALPPPPPPP 75
>AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collagen
precursor variant protein.
Length = 1463
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -3
Query: 737 KKKPXPPGXXFFXXPPXPXXGGPRFXXXXXXGVXKK--XGFFGGXGXGGPXKPP 582
K +P PPG PP P GPR +K GF G G GP PP
Sbjct: 975 KGEPGPPGSEGLPGPPGP--AGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPP 1026
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,886,576
Number of Sequences: 237096
Number of extensions: 1927328
Number of successful extensions: 3245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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