Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N14
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   181   1e-46
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   180   2e-46
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    29   1.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   1.2  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   3.6  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   4.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.3  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   8.4  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   8.4  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  181 bits (441), Expect = 1e-46
 Identities = 92/160 (57%), Positives = 112/160 (70%)
 Frame = +3

Query: 204 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 383
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106

Query: 384 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 563
            PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160

Query: 564 HTGRLLACVASRPGQCGRADGYILXGQELEFYLXKIKSKR 683
             GRL A V+SRPGQ GR DGYIL G+EL FYL ++  K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200



 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +2

Query: 65  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 196
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  180 bits (439), Expect = 2e-46
 Identities = 92/160 (57%), Positives = 112/160 (70%)
 Frame = +3

Query: 204 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 383
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106

Query: 384 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 563
            PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160

Query: 564 HTGRLLACVASRPGQCGRADGYILXGQELEFYLXKIKSKR 683
             GRL A V+SRPGQ GR DGYIL G+EL FYL ++  K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200



 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +2

Query: 65  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 196
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +3

Query: 186 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 365
           +V +P  +R   T  R+L   +G  S  S  ++ +TR    V +AS+N L+   +   ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590

Query: 366 IVVVDATPFRQWYE 407
             V   TPF   +E
Sbjct: 591 STVQRQTPFHSPFE 604


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 249 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 103
           CPD + G  Y     V +  ++R  PS+++A    ++  LF+R+  ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 381 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 560
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 561 FHTGRLLACVASR 599
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 177 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 356
           SVL +S    S+  + KYR   + T    WG E        I+  + +   E   T  L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187

Query: 357 KNAIVVV 377
           + A+ +V
Sbjct: 188 ELALTIV 194


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 264 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 437
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 438 K 440
           +
Sbjct: 310 Q 310


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 53  DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 169
           + TK G  +     RRA     A  RKK K + GRP +N
Sbjct: 3   ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 403 YHCLNGVASTTTIAFLTRVFVRTNS 329
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,515
Number of Sequences: 5004
Number of extensions: 59681
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)