Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N14
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   241   6e-64
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.85 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.85 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.85 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.85 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.85 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.85 
Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal ...    31   1.5  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  241 bits (589), Expect = 6e-64
 Identities = 111/162 (68%), Positives = 135/162 (83%)
 Frame = +3

Query: 204 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 383
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDA 106

Query: 384 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 563
            PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF
Sbjct: 107 APFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQF 166

Query: 564 HTGRLLACVASRPGQCGRADGYILXGQELEFYLXKIKSKRAK 689
           +TGRLLA ++S PGQ G+A+GYIL G+EL+FYL KI++K+AK
Sbjct: 167 NTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +2

Query: 65  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRI 193
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRV 43


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>Z81513-2|CAB04186.2|  489|Caenorhabditis elegans Hypothetical
           protein F26D2.2 protein.
          Length = 489

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +3

Query: 291 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 461
           T+I+ + Y A   E +  K L+   K +I+ +      +  +S+      RKK   +T  
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335

Query: 462 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 578
           ++AI  ++   +  +K L + + +K E  LEE+    +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374


>AF515833-1|AAM55225.1|  489|Caenorhabditis elegans synaptonemal
           complex protein SYP-1 protein.
          Length = 489

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +3

Query: 291 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 461
           T+I+ + Y A   E +  K L+   K +I+ +      +  +S+      RKK   +T  
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335

Query: 462 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 578
           ++AI  ++   +  +K L + + +K E  LEE+    +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,269
Number of Sequences: 27780
Number of extensions: 351614
Number of successful extensions: 991
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)