Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N12
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    28   2.2  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    28   2.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.7  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   6.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   6.7  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   8.8  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   8.8  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 390 KKDGPKICPLVEEKSCKAGCVCKEGYLKD 476
           K  GP IC L +E+     C+ K+G  K+
Sbjct: 139 KSRGPLICKLRKEQEISLRCIAKKGIAKE 167



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 588 KKDGPKICPLVEEKSCKAGCVCKEGYLKD 674
           K  GP IC L +E+     C+ K+G  K+
Sbjct: 139 KSRGPLICKLRKEQEISLRCIAKKGIAKE 167


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 447 CVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQC 569
           CV         +G C+ +E CP  DL  + E  V  ++ +C
Sbjct: 194 CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKC 234



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 249 CLCKEGYLKDDSGKCVARENCPNSDLCSENEIYVKCVQAQC 371
           C+         +G C+ +E CP  DL  + E  V  ++ +C
Sbjct: 194 CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKC 234


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +3

Query: 555  VQAQCSPMTCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENXPNSDLCSEN 734
            +QAQ       +    +I  L+ EKS +   + +  Y  D  GK +      N     E 
Sbjct: 1291 LQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEER 1350

Query: 735  EIYVKCVQAH 764
            E +++ +  H
Sbjct: 1351 EAFLRSLLEH 1360


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 746  HVYFIFRAEVRIWXVFSGDTFTAIVFQISLFTHASGFAGLFLHQWADLRTVLL 588
            + Y+   + +R+   F      +  F  + F+HA   AGL LHQW  +  V++
Sbjct: 876  YCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHA---AGLSLHQWTSMVNVVI 925



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 548  HIYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGLFLHQWADLRTVLL 390
            + Y+   + +R+   F      +  F  + F+HA   AGL LHQW  +  V++
Sbjct: 876  YCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHA---AGLSLHQWTSMVNVVI 925


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = -1

Query: 748 FTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQDFSS-------TNGQILGPSF 590
           FT ++F++ RS     S  +    S     +  +  ++ DFSS       TNG    P+ 
Sbjct: 14  FTILAFAQARSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNGVAQEPTL 73

Query: 589 FEHVIGLHCAWTQFTYIS 536
           +E   GL C   Q   IS
Sbjct: 74  YESSRGLSCPGYQARNIS 91


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 60  AMSFSWIVVLAFVNIIVLCTADLCS 134
           AM + W++ + FV  +    A+LCS
Sbjct: 75  AMVWGWLIAMVFVQCVANGMAELCS 99


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 111 LCTADLCSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCK 242
           + T  +C+E+EI  KC      P+ CS     +PC  + Q  C+
Sbjct: 1   MTTCSICNESEIKYKC------PK-CSFPYCSLPCWKIHQSQCE 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,140
Number of Sequences: 5004
Number of extensions: 79619
Number of successful extensions: 265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)