Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N10
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    29   1.2  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    28   1.6  

>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 304 LTLMRKSPHELVNLALGYAQTFG---NVVRVWLGSKLIVFLADADDIEIILNSHVHIDKA 474
           L+++ KS + L++  + + Q+     N   V L S++I  ++  +D+E+I+NS     K 
Sbjct: 733 LSILLKSKNLLIDTIISHLQSSTIHLNEESVCLLSRIIAVISKEEDLELIINSFTCAQKP 792

Query: 475 TE 480
            E
Sbjct: 793 VE 794


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
 Frame = +1

Query: 316 RKSPHELVNLALGYAQTF----GNVVRVWLGSKLIVFLADADDIE---IILNSHVHIDKA 474
           +KSP  L     G   T      N   +W    ++++LAD  D E    +   H    K 
Sbjct: 41  QKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKV 100

Query: 475 TEYKFFKPWLGEGLLISSGPKWRS--HRKMI--APTFHINILKSFVGI 606
            +Y FF+   G+G++      W S  H++++  A T + N +K  +G+
Sbjct: 101 IQYLFFQA-SGQGIIWGQA-GWFSVYHQELVISAITRYRNEIKRVLGV 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,837,529
Number of Sequences: 5004
Number of extensions: 84377
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)