Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N07
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0437 - 3449611-3449715,3451831-3451878,3452002-3452120,345...    59   5e-09

>12_01_0437 -
           3449611-3449715,3451831-3451878,3452002-3452120,
           3452277-3452422,3452760-3452986
          Length = 214

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 32/72 (44%), Positives = 40/72 (55%)
 Frame = +2

Query: 293 VKSYGTGEKVKLPGASADRPNCYEFGCFIR*DYNDLMEKDQNYYPPNGLVHXLXRDXXNK 472
           V SYGTG  VKLPG S   PN Y+FG      Y+DL  KD + Y  NGL+  L R+   K
Sbjct: 34  VASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDLRRKDPDLYKRNGLLPMLKRNTSVK 93

Query: 473 ALVPKKFXGXXG 508
            L P+++    G
Sbjct: 94  -LAPQRWQDNAG 104



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +1

Query: 214 AVVCSSNMNRSMEAHAFLGK 273
           A+VCSSNMNRSMEAH+ LG+
Sbjct: 10  AMVCSSNMNRSMEAHSLLGR 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,216
Number of Sequences: 37544
Number of extensions: 214724
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)