Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N07
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical pr...    66   4e-11
U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical
           protein T13C2.4 protein.
          Length = 235

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = +2

Query: 269 VKKGVFXIVKSYGTGEKVKLPGASADRPNCYEFGCFIR*D-YNDLMEKDQNYYPPNGLVH 445
           +KK  F I +SYG+G +VK+PG + D+PNCYEFG     D Y DL  KD + Y  NGL+H
Sbjct: 65  LKKRGFNI-ESYGSGNQVKMPGPTVDKPNCYEFGPTTYEDIYADLTNKDLHLYTQNGLLH 123

Query: 446 XLXRDXXNKALVPKKF 493
            + R+   K+  P++F
Sbjct: 124 MVDRNRRIKSR-PQRF 138



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/29 (75%), Positives = 22/29 (75%)
 Frame = +1

Query: 199 SDLYVAVVCSSNMNRSMEAHAFLGKKRGF 285
           S L  AV CSSNMNRSMEAH  L KKRGF
Sbjct: 43  SKLRFAVSCSSNMNRSMEAHGIL-KKRGF 70


>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 309 LAKKSNYLEPRQIGLIVTNLGVLYDEITMILWK 407
           +A   N+ E  Q GL+V NLG+ +D I + + K
Sbjct: 51  IAYGKNFSEMTQYGLVVLNLGLYFDLILIAIIK 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,240
Number of Sequences: 27780
Number of extensions: 204144
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)