Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_N05
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 287 8e-78
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 276 2e-74
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 270 1e-72
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 38 0.008
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 1.3
01_06_0627 - 30705604-30706977 29 3.9
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 6.7
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 8.9
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 8.9
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 8.9
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 287 bits (704), Expect = 8e-78
Identities = 131/231 (56%), Positives = 168/231 (72%)
Frame = +2
Query: 131 KFVVGGNWKLNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 310
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 311 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 490
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVI
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVI 173
Query: 491 ACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQD 670
ACIGE LEERE+GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+
Sbjct: 174 ACIGELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQE 232
Query: 671 VHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGA 823
VH A+R+WL NVS V+ +RI YGGSV AAN ELA +DIDGFLVGGA
Sbjct: 233 VHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGA 283
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 276 bits (677), Expect = 2e-74
Identities = 135/234 (57%), Positives = 165/234 (70%), Gaps = 2/234 (0%)
Frame = +2
Query: 128 RKFVVGGNWKLNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 301
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 302 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 481
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 482 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQ 661
KVIACIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP Q
Sbjct: 124 KVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQ 182
Query: 662 AQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGA 823
AQ+VH LR WL NVS +V+++ RI Y GSV AN KELA+ D+DGFLVGGA
Sbjct: 183 AQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGA 236
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 270 bits (662), Expect = 1e-72
Identities = 129/225 (57%), Positives = 166/225 (73%), Gaps = 2/225 (0%)
Frame = +2
Query: 155 KLNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 328
+LNG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 329 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 508
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 509 LEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALR 688
LE+RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLR 182
Query: 689 NWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGA 823
WL+ANVS V+++ RI YGGSVT AN KELA+ D+DGFLVGGA
Sbjct: 183 KWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGA 227
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/53 (45%), Positives = 30/53 (56%)
Frame = +2
Query: 665 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGA 823
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV GA
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGA 125
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 422 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 601
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 602 VLAY 613
LAY
Sbjct: 199 TLAY 202
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 617 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 784
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 310 LGCNFDIIRNDSLHIRQVNSRNTNNYL 230
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 28.3 bits (60), Expect = 8.9
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 1/156 (0%)
Frame = +2
Query: 158 LNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYV-KTIIPDNVEVAAQNCWKSPKG 334
L+G Q+ E+V + K +V++ + + K ++ + +A N S +G
Sbjct: 351 LSGAGIQLTEVVKDAKTTKDPDYCDVLISTINSIMGWTEKRLLAYHETFSASNI-DSMQG 409
Query: 335 AFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLE 514
+ +S A I ++ H R E D +V K+ + S L+ + +E
Sbjct: 410 IVSIGVSTAKILAEDIS-----HEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKME 462
Query: 515 ERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPV 622
E +S ++ L L AIGD Y PV
Sbjct: 463 EADSKRSSRHPVPVLSILAKAIGDLATKEKTVYSPV 498
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +2
Query: 113 LTXMGRKFVVGGNWKLNGDKN-----QINEIVNNLKKG 211
L + ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 802 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 653
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,109,785
Number of Sequences: 37544
Number of extensions: 447112
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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