Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_N02
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    30   0.39 
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    28   2.1  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   4.8  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -2

Query: 678 SVTALSLKNLTKIFL*SNKVGKYYLDQFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 499
           S+  L  K++  +    NKV      QFSV KN   + MF   LP Y+H H+ I   D +
Sbjct: 196 SIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +3

Query: 252 SPQRDGERMRRVVQSLYTEEKHRRHNRPAIYPIAQHRSHKYRSSRGHHEHPDTVP 416
           S Q D ++ +   Q   +   HRR++  + +P    RS  YRS R H+++ DT P
Sbjct: 305 SQQEDYDKPKNT-QVSRSSNHHRRYD--SYHP--DSRSDSYRSKREHYDNRDTGP 354


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 349 LHNIDRINTE--VHGVIMNIPIPFPLPE 426
           LH + ++N +  VHGV++ +P+P  L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,876
Number of Sequences: 5004
Number of extensions: 70897
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)