Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_N01
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 36 0.042
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 36 0.056
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.39
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.7
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 6.4
01_01_0082 + 625198-625719 29 6.4
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 28 8.5
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 28 8.5
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 28 8.5
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 35.9 bits (79), Expect = 0.042
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 235 DNNNPGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 414
D +NP +E P +PP P+ + Y+P + YY DPP Y+ P P P
Sbjct: 34 DGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPY 88
Query: 415 ARGG 426
GG
Sbjct: 89 YGGG 92
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 35.5 bits (78), Expect = 0.056
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 247 PGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGA 417
P Y P + P V PP Y P +G P N + Y +PP GRP P P GA
Sbjct: 388 PEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGA 446
Query: 418 RG 423
G
Sbjct: 447 GG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 265 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 414
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 283 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 399
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 271 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 411
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Frame = +1
Query: 247 PGHGNGYEPIDNRPYIVNPPKDYNPNGN--GYEPIDNG--AY--YVDPPQ---GRPYFKP 399
PGHG GY+P + Y+ PP Y N P+ G +Y Y PP+ P +
Sbjct: 332 PGHG-GYQPKNGDAYLSVPPSSYMMNQPVIPVRPVYQGPMSYDGYYGPPRANFNNPNVRD 390
Query: 400 TPFPG 414
PF G
Sbjct: 391 PPFVG 395
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 247 PGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARG 423
P G GY P + NP YNP +G+ N Y+ PP G Y + F P A
Sbjct: 97 PYGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAA 151
Query: 424 G 426
G
Sbjct: 152 G 152
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 235 DNNNPGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 399
D ++ + + P D P + P +++ G G DPP GRP P
Sbjct: 464 DGSSSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDP 518
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 250 GHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT-PFP 411
GHGN + +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNK--NNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Frame = +1
Query: 172 KVVENADSVRDAKKRYGVNVVDNNNPGHG-NGYEPIDNRPYIVNPPKDY-----NPNGNG 333
KV D +K G+N NN G +G + Y +Y NP +
Sbjct: 479 KVARMEKEKADRRKPSGMNRFQNNKRARGASGPQSFPPSKYSRGSNSNYGSSFRNPASHS 538
Query: 334 YEPIDNGAYYVDPPQGRPYFKPTPFPGAR 420
+ D + P RP+F P G R
Sbjct: 539 FPYTDRAGFVGPAPGARPHFAPGSSMGTR 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,729,089
Number of Sequences: 37544
Number of extensions: 299086
Number of successful extensions: 790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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