Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M24
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    32   0.49 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    30   2.6  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    29   6.0  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    29   6.0  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   7.9  
U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 197 DPDPFFAQPT-VGNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDRPQGRPYF 367
           DP+   +QPT +G G  P    P  V PP  Y   P  +G    DNGA     P G PY 
Sbjct: 345 DPNLPPSQPTPIGGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYP 401

Query: 368 KPTPFPGARG 397
              P P   G
Sbjct: 402 SDVPAPYPSG 411


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 176 ADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 316
           + SV+   P     QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 80  SQSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 176 ADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 316
           + SV+   P     QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 51  SQSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMP 90


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 176 ADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 316
           + SV+   P     QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 80  SQSVLFEQPQ---IQPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -3

Query: 789 FPKLPPDLKHKMNAIVVVXLFIAXYNGYK*SNSITNFTNKAFFSLHFSCGLSKLINVSYH 610
           FPK P    H +  ++V    +   +    S    NFT K  FS HF+      +    +
Sbjct: 2   FPKFPKSKIHSLKFLLVAVFMVTCLSHLYSSYYPENFTFKEGFSSHFAISPVSEVKAG-N 60

Query: 609 VWIQLT 592
            WI +T
Sbjct: 61  KWIVVT 66


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -3

Query: 789 FPKLPPDLKHKMNAIVVVXLFIAXYNGYK*SNSITNFTNKAFFSLHFSCGLSKLINVSYH 610
           FPK P    H +  ++V    +   +    S    NFT K  FS HF+      +    +
Sbjct: 2   FPKFPKSKIHSLKFLLVAVFMVTCLSHLYSSYYPENFTFKEGFSSHFAISPVSEVKAG-N 60

Query: 609 VWIQLT 592
            WI +T
Sbjct: 61  KWIVVT 66


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
 Frame = +2

Query: 131 WLWPTLKTPXRV------VENADSVVIN--DPDPFFAQPTVGN-GYEPIDNRPYIVNPPK 283
           ++WPTL+    V      V+ A  V  N  D + +  +P V + GY+  D     VN P 
Sbjct: 594 YVWPTLRRAMSVEPSSMPVDFAPGVPHNYDDNEEYKWEPVVNDPGYKKEDKNFTPVNSPP 653

Query: 284 DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 379
                G+G  P+D  A    R Q +   +P+P
Sbjct: 654 ASPRRGHGVGPLDEPA----RRQAKYVIQPSP 681


>U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical
           protein C30G12.1 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 285 TTTLMETATNLSTTVHITWTVPKADLTSSLPLS 383
           TTT M T T  ST +  T T P+     ++P S
Sbjct: 294 TTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFS 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,877
Number of Sequences: 27780
Number of extensions: 359201
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)