Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M21
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.39 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    30   0.52 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   6.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.4  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    26   8.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +1

Query: 169  NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPTPFP 333
            N    N Y PI      VNP   Y P+G        G+  V PP++P  +  P P
Sbjct: 977  NMPPSNPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPKQPANRVVPLP 1023


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +2

Query: 149 TPLG*WKTPTQETATNLLTTARTSLILPKTTT----LMETATNLSTTVHITWTL--PADL 310
           TP+    TPT ET T L T A T+ +   TTT     M T T ++TT  +  T+  P  +
Sbjct: 249 TPMEAMITPTVET-TTLPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVETMITPTVV 307

Query: 311 TSSLPLSLVLAV 346
           T++  + LV+AV
Sbjct: 308 TTTPMVILVMAV 319



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 170 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPADLTSSLPLS 331
           TP +ET T L   A T+ +   TTT     T    TV    T   +  + LP++
Sbjct: 143 TPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMA 196


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 175 DSGNGYEPIDNRPYIVNPPKD-YNPNGNGYEPIDNGAYYVDPPRRP 309
           DSGN +      P  V PP + YNP     +P  +  Y   PP +P
Sbjct: 577 DSGNDWH---GNPSTVPPPTNPYNPGYPYMDPNYSSGYVSQPPWQP 619


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 170 TPTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPADLTSSLPLSL 334
           T T  T TN      TS     +T++  T  + S +  IT T+P   TSS  + +
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI 207


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 169  NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 312
            NAD G  Y  +DN   I   P        G   I N   ++DPP +PY
Sbjct: 1025 NADQGWVYGDLDNDTIIDRVPP-------GSSRISNFIRFLDPPPKPY 1065


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 ILRGPSPPTLLQAYPFPWCSRWEVKNIL 365
           +L G   P L   Y + WC+  E+KN L
Sbjct: 225 LLNGLDVPNLQNVYDWVWCTYDELKNKL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,623
Number of Sequences: 5004
Number of extensions: 60375
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)