Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M18
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    42   1e-04
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    26   8.5  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +1

Query: 646 IQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWXVFGMIGGFCYIVIQLILIIDFAHSWAE 825
           IQNG W  K +L                +    +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 125 IQNGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184

Query: 826 IWVSKYEETES 858
             V +   ++S
Sbjct: 185 RCVDRVLTSDS 195


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 660 LGHQIFIGYWWHYRSILHPRRSICFDMDXV 749
           L HQ F  +W+  R +++P R +C+ +  V
Sbjct: 544 LYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 825 FSPGMCKINDKDELDNNVAEASNHSKHXPCRSKLTSWDEECSDNATNNQ*IFDGPKTILN 646
           FS G  +I   + L NNV E +N +    C+     +  +C    TN+    D P+T  N
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPET-FN 104

Query: 645 SS 640
           SS
Sbjct: 105 SS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,359
Number of Sequences: 5004
Number of extensions: 76020
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)