Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_M18
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 105 6e-23
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 89 3e-18
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 51 1e-06
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 28 8.0
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 28 8.0
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 28 8.0
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 105 bits (251), Expect = 6e-23
Identities = 52/102 (50%), Positives = 64/102 (62%)
Frame = +1
Query: 601 LIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWXVFGMIGGFCYIV 780
LIMIGVK SKD R+ IQNGFW KYL++ A+ G+IGGF +I+
Sbjct: 109 LIMIGVKDSKDGRSSIQNGFWFFKYLILGALIVGFFFIRSESLATPLMYIGLIGGFMFIL 168
Query: 781 IQLILIIDFAHSWAEIWVSKYEETESKGWYAALLIPMLTCFA 906
IQLILI+DFAH AE WV+ YEE+ES YA LL+ + FA
Sbjct: 169 IQLILIVDFAHGLAEAWVTSYEESESNYCYAGLLVTVFGGFA 210
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 354 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 530
+ST++R+MYA +L T + CI L PG+ N+L + FC + + C
Sbjct: 35 SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85
Query: 531 EAVGYLAVYRITFATCLFFLL 593
A G+ AVYR+ AT F+LL
Sbjct: 86 HATGFQAVYRVCAATASFYLL 106
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 89.4 bits (212), Expect = 3e-18
Identities = 48/102 (47%), Positives = 61/102 (59%)
Frame = +1
Query: 580 SSFC*WRLIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWXVFGMI 759
S F + L+M GV SSKD R+ IQNGFW KYLL+ A+ GM+
Sbjct: 102 SFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFGIIGGFFFIGSETLATPLMYIGML 161
Query: 760 GGFCYIVIQLILIIDFAHSWAEIWVSKYEETESKGWYAALLI 885
G F +I+IQLILI+DFAH AE S+YE+ +S+ YA LLI
Sbjct: 162 GAFLFILIQLILIVDFAHGLAE---SQYEDNDSRACYAGLLI 200
Score = 52.4 bits (120), Expect = 4e-07
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +3
Query: 354 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 533
NST++R+MYALML+ T + + L PG+ +L + + + + V+C+
Sbjct: 35 NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYA--------GVNCEH 86
Query: 534 AVGYLAVYRI-TFATCLFFLLMASNYDWCQI-F*RSKSWNSKWFLGHQIFIG 683
A+GY AVYR+ A FFL M + RS N WF + + G
Sbjct: 87 AIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFG 138
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 354 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 530
+ST++R+MYA +L T + CI L PG+ N+L + FC + + C
Sbjct: 35 SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85
Query: 531 EAVGYLAVYRITFATCLFFLL 593
A G+ AVYR+ AT F+LL
Sbjct: 86 HATGFQAVYRVCAATASFYLL 106
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 790 ILIIDFAHSWAEIWVSKYEETESKGWYAALLIPMLTCFA 906
ILI+DFAH AE WV+ YEE+ES YA LL+ + FA
Sbjct: 108 ILIVDFAHGLAEAWVTSYEESESNYCYAGLLVTVFGGFA 146
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 317 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 415
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 317 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 415
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 317 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 415
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,150,375
Number of Sequences: 27780
Number of extensions: 429616
Number of successful extensions: 1173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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