Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M16
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    71   2e-13
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   3.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   3.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.5  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
 Frame = +3

Query: 453 RGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYN 632
           +G  F+RA+ Q C     +I+++++LG  H GI  IP C          V  +L    ++
Sbjct: 107 QGGLFLRALAQTCD--AAKIRSLITLGSPHSGINTIPGCSPTNLICKAVVHSILGLGIWH 164

Query: 633 SWVQNSLVQATYWHDPLDERTYXANSVFLADINN-VRTVNKT-YIQNLNNLXRFVLVMFD 806
           SW+QN +VQA Y+        Y  N+ FL  +NN V   N T  I+ L  L   V V F+
Sbjct: 165 SWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDNLVAVSFE 224

Query: 807 NDSIXXPKXTEWF 845
            D I  P  +  F
Sbjct: 225 RDDIVEPPYSTGF 237



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 32/84 (38%), Positives = 50/84 (59%)
 Frame = +2

Query: 206 PIVLWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVE 385
           P+V+WHG+GDT   SF+L      ++K   G  V ++++G+N  ED + GY      Q++
Sbjct: 27  PVVIWHGLGDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLD 84

Query: 386 YVCEKLAADPKLSNGFNVMGFSQG 457
            VC+ +  +  LSNGF  +G SQG
Sbjct: 85  EVCDLIGNEDSLSNGFYALGLSQG 108


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 591 CDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDE 689
           C   RK+++    N  + +S V A Y+ DP+DE
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDE 243


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 600 VRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYXANSVF 716
           + ++ N      W +NSL+    W D  D  T   N  F
Sbjct: 86  IDEIFNSTQVPEWAKNSLLDTNTWLDTSDFNTSFTNETF 124


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 281 EKNIPGV-YVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAADPKLSNGFNVMGFSQG 457
           EKN+    +V S+  GN T+ED  +     P  Q  Y  +   AD K S   ++  F   
Sbjct: 402 EKNVDNQEFVTSISNGNQTLEDTSHSPQTQPPFQPPYPSK---ADEKNSYHSDLYNFGSS 458

Query: 458 MSV 466
           ++V
Sbjct: 459 LTV 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,992
Number of Sequences: 5004
Number of extensions: 69231
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)