Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M15
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   1.6  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   4.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    27   4.9  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    27   4.9  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   8.5  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   8.5  

>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 123 HGNQEVEVLKDNVHNASQLVVDYQTNT-LFFSHSSLFEGKTVLKSAYLNLNTKEFGEISG 299
           H    ++V++  V + ++ V  Y  N  L F   S   GKT L S+++N NT      + 
Sbjct: 396 HNTDALKVMRKRV-SQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV 454

Query: 300 INSGVATAYDRSKNVVYLGWTGWDI 374
           +NS    +  R   +  +G T  DI
Sbjct: 455 VNSVEFQSTQRYLVLSEIGETDLDI 479


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 84  MKLIILITIIAFVHGNQEVEVLKDNVHNASQLVVDYQTNTLFFSHSSLF 230
           ++L+  ++IIA +HGN+E+ V   ++   + L +D + +      SS F
Sbjct: 408 IQLLTPVSIIASLHGNKEIGV--QDIEECNDLFLDARRSAQVVKSSSGF 454


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 625 TNINGVLFKVHLHVIPVNGFASDFDDRLYFSTPNAIFSSNENGGILEEVF-RVEES 789
           + + G L+ +    IP+  F +  D +   +    +F+   +  ILE +F  +EES
Sbjct: 195 SKLQGCLYTIFNLKIPLEMFDTSLDSKFLSNVKTKVFNMKASTEILESLFTSIEES 250


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 646 FKVHLHVIPVNGFASDFDDRLYFSTPNAIFSSNENGGILEE 768
           F V L VI VNGF    D+   F        S  +  ++EE
Sbjct: 75  FHVDLTVIEVNGFGDKIDNSASFEVVTHYLESQFDQALIEE 115


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 593 ILLIPLASLC*XISMESCSKYIYMLF 670
           ++L+P+  LC  I   +CS Y  +LF
Sbjct: 69  VMLLPIFLLCRCICKSNCSPYPILLF 94


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -1

Query: 791 SLSSTLKTSSNIPPFSLDEKIAFG-VEKYNLSSKSLANPLTGITCKCTLNKTPLIXVSTK 615
           SL S+ + +   P F+ D+++ FG V+    S  S       I     ++  P+  + T+
Sbjct: 674 SLKSSFEAAKLEPSFTFDQQLCFGKVDSVGDSKSSKFGESDRIDLSAYMDVNPISVLHTQ 733

Query: 614 MPAELAKYILYFLLS 570
             A +A  +L+ +LS
Sbjct: 734 SIANVA--VLFEVLS 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,722
Number of Sequences: 5004
Number of extensions: 75278
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)