Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M13
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 466 WXPFXWGGXG 437
           W PF WGG G
Sbjct: 558 WGPFTWGGIG 567


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 288 PXPPXPGXPPGXXXPPPPXG 347
           P  P  G PP     PPP G
Sbjct: 31  PQAPQRGSPPNPSQGPPPGG 50



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 287 PPSPXXXXPPGXXXXPPP 340
           PP+P    PPG     PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 402 GGKKXPPPXXXPPXPPXKKG 461
           G    PP    PP PP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +2

Query: 404 GXKXPPPXXXPPXXPPXKRXP 466
           G    PP   PP  PP    P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.157    0.555 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,333
Number of Sequences: 438
Number of extensions: 10606
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)