Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M09
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    31   0.94 
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    30   2.9  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    29   5.0  

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
 Frame = +3

Query: 315 HMRLAGFKDLGYSFV---AGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFIG--DFREKL 479
           H R +   + GYSFV    GG G+I+ G  W         Y ++S  I   G  D+ +  
Sbjct: 377 HARESVDDNTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPS 436

Query: 480 PTQQA--LQAVHDFLACGVEKNLLTEDYHVVGHQQLINTLSPGAVLQSEIESWPH 638
             Q A  L +V   + C  ++ +   +Y   G    ++   P A   S+++  P+
Sbjct: 437 RDQYASSLYSV-SIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVLPY 490


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +3

Query: 567 GHQQLINTLSPGAVLQSEIESWP----HW-LDNARKV 662
           GH  LI    PG +LQ E+E WP    HW L+ A K+
Sbjct: 85  GHSVLIRIAVPGLILQQELE-WPPSFNHWNLEQAPKL 120


>10_08_0371 + 17265691-17265788,17265873-17265971,17266586-17266628,
            17267250-17267321,17267400-17267495,17267609-17267842,
            17267914-17268097,17268247-17268358,17268447-17268533,
            17268703-17268841,17269628-17269718,17270045-17270154,
            17270309-17270413,17270982-17271055,17271379-17271454,
            17271786-17272022,17272419-17272490,17273082-17273153,
            17273240-17273304,17273306-17273383,17273384-17273486,
            17273769-17273858,17274873-17274980,17275063-17275113,
            17276126-17276203,17276284-17276346,17276944-17277140,
            17277243-17277312,17277640-17277828
          Length = 1030

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 252  VSNDCFTDEECLLSVNSLRQHHM--RLAGFKDLGYSFV--AGGNGKIYE 386
            ++ DC   + CL ++N+L  +H   RL G   L    +   G NGK+ E
Sbjct: 877  LNKDCDIVDRCLTAINALASYHFKERLGGRGGLSSQLMESEGSNGKLQE 925


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,192,678
Number of Sequences: 37544
Number of extensions: 501799
Number of successful extensions: 1133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)