Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M03
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    28   2.1  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   3.7  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    27   3.7  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   6.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   6.5  
SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|c...    26   8.6  

>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 306 LFSKHGVKGFT 338
           LFSKHGVKGFT
Sbjct: 231 LFSKHGVKGFT 241


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 532 WTIGLSSTRTPTRSSEGACSS 594
           WTI LS   T TRS+  +CS+
Sbjct: 38  WTIALSQHETETRSTRTSCST 58


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 116 TQLCHHTGLQNKHIPERKNRL*LKS*GIPYSEI 18
           T+L + TGL  KHI E  N   LK  G+PY ++
Sbjct: 102 TKLPNTTGLSRKHIIEGLNAS-LKRLGLPYVDV 133


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 288 YKQAYSLFSKHGVKGFTPLPFFGNMGR 368
           YKQA+SLF +HG  G  P    G++ R
Sbjct: 8   YKQAFSLFDRHGT-GRIPKTSIGDLLR 33


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 758 RCPRSQPPASCILCFSALFICCPTSTMNGIMSFI 657
           RC R Q     IL +S   IC  T  MN I S I
Sbjct: 68  RCERLQKTLKEILPYSDSKICLATDAMNNIKSCI 101


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 366 RIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLNPMVIIRDIELLK 500
           ++V  +DHF D I S+  +F     V    + N +  IRD  L++
Sbjct: 507 KLVAYLDHFGDEILSI--NFDPSNAVTYINYANKVAFIRDPYLIE 549


>SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 72  GYVFVLKTCVMTQLRHQNIL*DTKHKVKNTVVLNEKLA 185
           G+ FV++  +    R  N    +K KV+NTV+  E  A
Sbjct: 27  GHRFVIRDLLRNGFRQNNCSFYSKEKVENTVIFLEMAA 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,636
Number of Sequences: 5004
Number of extensions: 75716
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)