Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M03
         (915 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0758 - 19973797-19974651                                         32   0.55 
02_05_1279 + 35427916-35429511                                         31   0.97 
02_01_0545 + 3996568-3996645,3998061-3998168,3998409-3998493,399...    30   2.9  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    29   3.9  
06_03_1356 - 29536027-29537379                                         29   6.8  

>09_04_0758 - 19973797-19974651
          Length = 284

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 580 GACSS*EIKTGKTCAQRFHRAFTSSKMKLMMPFIVEVGQQMNKALKQRIQEA 735
           GA  S E+     C  R H A T  ++ + +P  ++ G  +  AL QR+Q++
Sbjct: 233 GALRSLELPVQHACVMRVHGATTVQEVLVDVPAALQDGDALRAALLQRLQDS 284


>02_05_1279 + 35427916-35429511
          Length = 531

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = +3

Query: 465 PMVIIRDIELLKKITVKDFEHFLDHRTIINKDTDPFFGRSLFFLRDQDWKDMRSTLSP 638
           P + + D E LK  T            +  +D  P FGR L      +W   R  ++P
Sbjct: 101 PFLYVADPEFLKAATAGALGKLWGKPDVFRRDRMPMFGRGLVMAEGDEWARHRHIIAP 158


>02_01_0545 +
           3996568-3996645,3998061-3998168,3998409-3998493,
           3998789-3999024,3999250-3999423,3999510-3999557,
           3999659-3999718,3999815-3999901,4000007-4000095,
           4000209-4000300,4001110-4001171,4001271-4001420,
           4001507-4001722
          Length = 494

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +3

Query: 408 SLYDSFPEERFVGRYEFLNPMVIIRDIELLKKITVKDFEHFLDHRTIINKDTDPFFGRSL 587
           SLYD F E   V +  F     ++    ++ +  +++   F   + ++ +   P  G+ L
Sbjct: 19  SLYDWFLEHGSVYKLAFGPKAFVVVSDPIVARHILRE-NAFCYDKGVLAEILKPIMGKGL 77

Query: 588 FFLRDQDWKDMRSTLSPGVHQL 653
                  WK  R  ++PG H L
Sbjct: 78  IPADLDTWKQRRKVITPGFHAL 99


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
 Frame = +3

Query: 348 FFGNMGRIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLNPMVIIRDIELLKKITVKDFEH 527
           FFGN G   +  D F++ ++ L+D      F   Y+  +   I      L  +   D  H
Sbjct: 277 FFGNDGNEPLHYDKFTNFLKGLHDEIIRLEF-SHYDVKSSNTIPAKDFALSMVASADMNH 335

Query: 528 ---FLDHRTIINKDTDPFFGRSLFFLRDQDWKDMRSTLSP 638
               LD    +  D D   G  + F   + + D+R  L P
Sbjct: 336 INKLLDRVDNLGNDPD-LKGVRITFEEFKSFADLRRRLEP 374


>06_03_1356 - 29536027-29537379
          Length = 450

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 432 PQGMNRINFVYGPRNDPFLLQYAPCCQRKVAE*SPSLRAC*TKNR 298
           P+ M R+ F +GPR    L Q+AP   R        + AC  ++R
Sbjct: 234 PEDMVRVPFFFGPREIAGLRQHAPASVRGACSRFELVAACIWRSR 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,918,452
Number of Sequences: 37544
Number of extensions: 474358
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)