Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_M03
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    68   1e-13
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   2.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 67.7 bits (158), Expect = 1e-13
 Identities = 32/118 (27%), Positives = 59/118 (50%)
 Frame = +3

Query: 285 FYKQAYSLFSKHGVKGFTPLPFFGNMGRIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLN 464
           +    +  +   GV G  P+PFFG    +++     +  ++ +Y+ +  E  VG Y   +
Sbjct: 21  YLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRS 80

Query: 465 PMVIIRDIELLKKITVKDFEHFLDHRTIINKDTDPFFGRSLFFLRDQDWKDMRSTLSP 638
           P +++ D EL+K I ++DF  F +    + + T+P     L  L  + W+ +RS LSP
Sbjct: 81  PFLLLNDPELIKDILIRDFSKFANRGLGVFERTEP-LSPHLLNLEVERWRPLRSRLSP 137



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 598 EIKTGKTCAQRFHRAFTSSKMKLMMPFIVEVGQQMNKALKQRIQE 732
           E++  +    R    FTS K+K M   I+E    +   L + I++
Sbjct: 124 EVERWRPLRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKLIEK 168


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 731 KQGVGYVDIDSKDLTTKYAN 790
           KQGV  V++ S+++T  +AN
Sbjct: 123 KQGVCTVEVSSENMTVTFAN 142


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 731 KQGVGYVDIDSKDLTTKYAN 790
           KQGV  V++ S+++T  +AN
Sbjct: 123 KQGVCTVEVSSENMTVTFAN 142


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 56  IYFFARVCVCFEDLCDDTIASSKHTLR 136
           I   + +CVC   +  D + S  HT++
Sbjct: 4   IVIISAICVCVSAMTLDELKSGLHTVQ 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,449
Number of Sequences: 438
Number of extensions: 4995
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)