Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L21
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   2.1  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   6.3  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   6.3  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   6.3  

>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 666 SFLRXTPRCGSNPCTLVLDPAHRFELLRGVLAMLRLVSRSLSLPKV 529
           S LR T     N C LV DPA   + L  ++  +  ++++ ++P+V
Sbjct: 270 SMLRLTVIITDNLCKLVPDPAEASDFLPELIPDVERIAQTAAMPEV 315


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 162 FFSSSRSFLQKPRPPKKPPHY 100
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 530 SSLSLDEEVDFEAVPDAGVARTRVKSSLARVVGYRRSAFSRN 405
           +S+S    +D +A+PD     + V S   R +  RR+  SRN
Sbjct: 27  TSISSTNIIDLDAIPDDSFPSSPVLSPRRRRMNRRRNERSRN 68


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 286 LIQLLKNAKMTIEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYPTTRAKEL 456
           +IQ ++  K  +   K +AE C EI+++   +   EK  +FLL+  R   T  A+EL
Sbjct: 596 IIQNVEKLKSYLNSFKVQAE-CSEISKILSFSQETEKKYKFLLQTVR-NETEIAREL 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,771
Number of Sequences: 5004
Number of extensions: 48314
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)