Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_L21
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0327 + 20984336-20985478 46 5e-05
05_04_0027 - 17298727-17299830 43 4e-04
03_03_0278 - 16126803-16129049 38 0.014
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386 33 0.41
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 32 0.71
10_02_0138 - 5745893-5745924,5746824-5747580 30 2.2
01_04_0054 - 15456668-15459691 30 2.2
01_06_0299 + 28305447-28305729,28305892-28306104,28306915-283070... 29 3.8
03_06_0600 + 34988743-34989407,34990033-34990051 29 5.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 29 6.7
>01_05_0327 + 20984336-20985478
Length = 380
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 319 IEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYPTTRAKELL 459
+EGNKD+A KC+ I + A AG+ +A +FL KA+RL P+ LL
Sbjct: 1 MEGNKDDAVKCLRIGKAAADAGDSARAVKFLSKAKRLDPSLPIDHLL 47
>05_04_0027 - 17298727-17299830
Length = 367
Score = 42.7 bits (96), Expect = 4e-04
Identities = 18/47 (38%), Positives = 34/47 (72%)
Frame = +1
Query: 319 IEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYPTTRAKELL 459
++GNKDEA + +++A+ A +G+ ++AE+FL A+RL P+ ++L
Sbjct: 1 MDGNKDEALRSVKLAETALASGDRQRAEKFLRIAQRLDPSLPIDDML 47
>03_03_0278 - 16126803-16129049
Length = 748
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 319 IEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYP 435
+E NKDEA + EIA+ F + +++ A++F LKA+ L+P
Sbjct: 1 MECNKDEALRAKEIAERKFESKDLQGAKKFALKAQALFP 39
>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
Length = 871
Score = 32.7 bits (71), Expect = 0.41
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 319 IEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLY 432
+E N+D+A + EIA+ F ++ A+RF LKA+ L+
Sbjct: 128 MECNRDDAIRSKEIAERKFNENDIAGAKRFALKAKTLF 165
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 31.9 bits (69), Expect = 0.71
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 467 TRVKSSLARVVGYRRSAFSRNLSAFSTFPAVK--ANWAISIHFSASSLLPSIVILAFFKS 294
T++ +S ARVVG+ RSA R ++ + + +N IH A SIV L +F
Sbjct: 219 TKISNSYARVVGFLRSAIGRFITEYELDDQWREISNDPPKIHIDALPPAGSIVSLQYFLG 278
Query: 293 CINYSTLQEAR 261
+ ++ AR
Sbjct: 279 QAHNKLVETAR 289
>10_02_0138 - 5745893-5745924,5746824-5747580
Length = 262
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 331 KDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYPT 438
+++AEK ++ A+ F AGNV A +A+RL P+
Sbjct: 13 REQAEKALQRAEELFAAGNVRSAHLQAGRAKRLCPS 48
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 319 IEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYP 435
+E NK+EA K +IA + + A+R LKA+R++P
Sbjct: 1 MECNKEEALKARDIAAKKMESKDFVGAKRIALKAQRIFP 39
>01_06_0299 +
28305447-28305729,28305892-28306104,28306915-28307043,
28307677-28307857,28308329-28308425,28309157-28309260,
28309734-28309785,28310040-28310252
Length = 423
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 408 SAKSRASVPNDSCQGTFDSCPCYACIGNCFEVYFLI 515
+A + A+ P+D+ QG SC C + + V+FL+
Sbjct: 85 AAAASANFPSDTLQGYVVSCSCGVAVRTFYFVHFLV 120
>03_06_0600 + 34988743-34989407,34990033-34990051
Length = 227
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 316 TIEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYP 435
T +++EAEK E+A+ F A ++ A +A RL+P
Sbjct: 3 TGRNDEEEAEKAYELAENRFRANDIAGALHAAREARRLFP 42
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Frame = -1
Query: 660 LRXTPRCGSNPCTLVLDPAHRFELLR-------GVLAMLRLVSRSLSL 538
LR PRCG+ + + +HR +++R GV A+ +V++ LSL
Sbjct: 630 LRKPPRCGNGDGVVTIKASHRGDIIRFRVPCSAGVAAVKAVVAKRLSL 677
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,939,449
Number of Sequences: 37544
Number of extensions: 359394
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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