Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L17
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   180   1e-45
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   179   2e-45
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    28   8.8  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  180 bits (439), Expect = 1e-45
 Identities = 97/208 (46%), Positives = 126/208 (60%), Gaps = 4/208 (1%)
 Frame = +2

Query: 224 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 403
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 404 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 583
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 584 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHR----GSHLWFACC*IHEKS*TG 751
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR    G H+      + E+    
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 752 **XFFQETISKYIKLXVTADAIEAIYXK 835
               FQ   S+Y+K  + AD +EA+Y K
Sbjct: 216 ----FQAHFSEYLKKGIDADGMEALYKK 239


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  179 bits (436), Expect = 2e-45
 Identities = 96/208 (46%), Positives = 126/208 (60%), Gaps = 4/208 (1%)
 Frame = +2

Query: 224 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 403
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 404 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 583
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 584 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHR----GSHLWFACC*IHEKS*TG 751
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR    G H+      + E+    
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 752 **XFFQETISKYIKLXVTADAIEAIYXK 835
               FQ   S+Y+K  + AD +E++Y K
Sbjct: 216 ----FQAHFSEYLKKGIDADGMESLYKK 239


>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
            30287611-30287920,30288561-30290197
          Length = 1082

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
 Frame = +2

Query: 500  NVEPVDNG---PGAFRCYLDVGLAR------TTTGARVFGAMKGA----VDGGLNVPHSI 640
            NV PV  G   P    C L+ G             ARV  A  GA    VD  ++V  ++
Sbjct: 929  NVCPVHRGVCTPATTFCLLEAGAVEGLLACLENDDARVVDAALGALCTLVDDRVDVEKAV 988

Query: 641  KRFPGYDAESKKFNA-EVHRGSHLWFACC*IHEK 739
                G  A  +   A   HRG+ LW  C  + EK
Sbjct: 989  VALAGQGAARRVLAALRQHRGNSLWHRCFSVVEK 1022


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,654,186
Number of Sequences: 37544
Number of extensions: 410777
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)