Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_L17
(896 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 243 6e-64
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 241 2e-63
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 241 2e-63
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 241 2e-63
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 241 2e-63
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 239 1e-62
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 237 4e-62
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 167 6e-41
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 118 4e-26
U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein prot... 91 5e-18
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 243 bits (595), Expect = 6e-64
Identities = 120/212 (56%), Positives = 146/212 (68%), Gaps = 6/212 (2%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 98 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 157
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLW------FACC*IHEKS 742
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR H+ + C + E
Sbjct: 158 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHR-KHIMGQNVADYMRCLMEEDE 216
Query: 743 *TG**XFFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 217 -----DAYKKQFSQYIKNSVTPDMMEEMYKKA 243
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 241 bits (590), Expect = 2e-63
Identities = 117/206 (56%), Positives = 141/206 (68%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 98 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 157
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS*TG**X 760
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 158 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDED 217
Query: 761 FFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 218 AYKKQFSQYIKNSVTPDMMEEMYKKA 243
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 198 HIMGQNVADYMRYLMEEDEDAYKKQ 222
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 241 bits (590), Expect = 2e-63
Identities = 117/206 (56%), Positives = 141/206 (68%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 98 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 157
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS*TG**X 760
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 158 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDED 217
Query: 761 FFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 218 AYKKQFSQYIKNSVTPDMMEEMYKKA 243
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 198 HIMGQNVADYMRYLMEEDEDAYKKQ 222
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 241 bits (590), Expect = 2e-63
Identities = 117/206 (56%), Positives = 141/206 (68%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 98 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 157
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS*TG**X 760
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 158 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDED 217
Query: 761 FFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 218 AYKKQFSQYIKNSVTPDMMEEMYKKA 243
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 198 HIMGQNVADYMRYLMEEDEDAYKKQ 222
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 241 bits (590), Expect = 2e-63
Identities = 117/206 (56%), Positives = 141/206 (68%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 98 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 157
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS*TG**X 760
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 158 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDED 217
Query: 761 FFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 218 AYKKQFSQYIKNSVTPDMMEEMYKKA 243
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 198 HIMGQNVADYMRYLMEEDEDAYKKQ 222
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 239 bits (585), Expect = 1e-62
Identities = 116/206 (56%), Positives = 140/206 (67%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCA Y+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAA 97
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 98 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 157
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS*TG**X 760
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 158 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDED 217
Query: 761 FFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 218 AYKKQFSQYIKNSVTPDMMEEMYKKA 243
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 198 HIMGQNVADYMRYLMEEDEDAYKKQ 222
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 237 bits (580), Expect = 4e-62
Identities = 117/206 (56%), Positives = 141/206 (68%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 45 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 104
Query: 401 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 580
AY TG EYNVE +D PGAF CYLD GLARTTTG
Sbjct: 105 AYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGN 164
Query: 581 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS*TG**X 760
+VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 165 KVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDED 224
Query: 761 FFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 225 AYKKQFSQYIKNSVTPD-MEEMYKKA 249
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 9 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 43
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 205 HIMGQNVADYMRYLMEEDEDAYKKQ 229
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 167 bits (405), Expect = 6e-41
Identities = 76/125 (60%), Positives = 90/125 (72%)
Frame = +2
Query: 260 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXX 439
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 440 XXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGG 619
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGG
Sbjct: 61 NRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGG 120
Query: 620 LNVPH 634
L++PH
Sbjct: 121 LSIPH 125
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 118 bits (283), Expect = 4e-26
Identities = 49/61 (80%), Positives = 59/61 (96%)
Frame = +2
Query: 221 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 400
+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 38 IQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
Query: 401 A 403
A
Sbjct: 98 A 98
Score = 35.5 bits (78), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 112 GFVKVVXHXXXXXXXXXXXXXXXEGKTDYYARKRL 216
GFVKVV + EGKTDYYARKRL
Sbjct: 2 GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRL 36
>U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein
protein.
Length = 145
Score = 91.1 bits (216), Expect = 5e-18
Identities = 47/91 (51%), Positives = 60/91 (65%)
Frame = +2
Query: 566 TTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRGSHLWFACC*IHEKS* 745
TTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR +
Sbjct: 1 TTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLM 60
Query: 746 TG**XFFQETISKYIKLXVTADAIEAIYXKA 838
+++ S+YIK VT D +E +Y KA
Sbjct: 61 EEDEDAYKKQFSQYIKNSVTPDMMEEMYKKA 91
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 702 HIFGLHVAEYMRSLEQDDXDSFKRQ 776
HI G +VA+YMR L ++D D++K+Q
Sbjct: 46 HIMGQNVADYMRYLMEEDEDAYKKQ 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,474,277
Number of Sequences: 237096
Number of extensions: 2321076
Number of successful extensions: 3976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3966
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -