Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L12
         (988 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   1.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   9.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   9.8  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 70  YNNNYKKIVKEFHI 29
           YNNNYKK+ K + I
Sbjct: 109 YNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 70  YNNNYKKIVKEFHI 29
           YNNNYKK+ K + I
Sbjct: 109 YNNNYKKLYKNYII 122


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -2

Query: 510 PXPXXXXXXXGXEXXXPPXPARGXKXXGRXGGPP 409
           P P         +   PP P++G    G  G PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/41 (26%), Positives = 12/41 (29%)
 Frame = +2

Query: 698 PXXXXXXPXXPPPPPXXXPKXXPPXGXXGGPPPGAXXXPXP 820
           P      P   P      P+   P     GPPPG      P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +2

Query: 719 PXXPPPPPXXXPKXXPPXGXXGGPPPGAXXXPXPXPP 829
           P    P P   P   P     G PP  +   P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
 Frame = +3

Query: 516 SXXGPXPXPPQXALXPPXXRGXPXAP---PPEXGXXGPP 623
           S   P P P          RG P  P   PP  G  G P
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 667  PPPXPPPP 690
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 479  PXPPPPPXGXG 511
            P PPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 94  NIHTEKQVYNNNYKKI 47
           N +     YNNNYKK+
Sbjct: 336 NYNNYNNNYNNNYKKL 351


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 94  NIHTEKQVYNNNYKKI 47
           N +  K++Y NNYKK+
Sbjct: 92  NNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 94  NIHTEKQVYNNNYKKI 47
           N +  K++Y NNYKK+
Sbjct: 92  NNNNYKKLYCNNYKKL 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,362
Number of Sequences: 438
Number of extensions: 11964
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)