Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L11
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    45   1e-05
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   4.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.5  
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    25   9.7  

>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 44/84 (52%)
 Frame = +2

Query: 206 METCGEGTNFQKEISNMMHGFGDNPNPNAATVLLVENIVLQQLRSILQEGIFNSNLRGSK 385
           M   G  + ++ EI  MM   G+  +P   T  LVE ++  Q+  +L +    +  RGS+
Sbjct: 1   MTETGRTSKYRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSR 60

Query: 386 TITNYDIIYTMRNNTVKLKRLHDY 457
           +IT  D+ + +R++  K+ RL  Y
Sbjct: 61  SITVEDLFFLIRHDRAKVNRLKTY 84


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 323 LQQLRSILQEGIFNSNLRGSKTITNYDIIYTMRNN 427
           L  LR   +  + N+N    +  ++Y ++YT +NN
Sbjct: 835 LAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNN 869


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 241 FLKVRPFSACFHSIISHFVSNSQEDFKITSNYYLY*FINYLDMYI 107
           F+ + PF   + S +    S ++E+       Y Y F+N+  +Y+
Sbjct: 506 FISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNFFLVYV 550


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/64 (25%), Positives = 35/64 (54%)
 Frame = +2

Query: 302 LLVENIVLQQLRSILQEGIFNSNLRGSKTITNYDIIYTMRNNTVKLKRLHDYQQKLDQID 481
           LLV N++L    SI +  I   + + ++   NYD +YT+ N+  +       ++K+ +++
Sbjct: 653 LLVRNVLL----SIYENKIIYFDWKKNRWEVNYDEMYTLDNDYSEPDAFMTAKKKISKLN 708

Query: 482 NKSQ 493
           + S+
Sbjct: 709 DSSR 712


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 428 TVKLKRLHDYQQKLDQIDNKSQVNVTTSAETIYSNIILEDEKDPTMKKKRT 580
           +V  + + ++ Q L    N  ++     A   +SN++LE+ K+   +KKRT
Sbjct: 31  SVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRT 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,471
Number of Sequences: 5004
Number of extensions: 41338
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)