Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L11
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0155 + 13274537-13274741,13274827-13274864,13274909-132749...    39   0.005
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528...    29   5.8  

>01_03_0155 +
           13274537-13274741,13274827-13274864,13274909-13274968,
           13275117-13275176,13277072-13277146,13277233-13277346
          Length = 183

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 23/117 (19%)
 Frame = +2

Query: 233 FQKEISNMMHGFGDNPN--------------------PNAATVLLVENIVLQQLRSILQE 352
           FQK++ +MM+GFGD+PN                    P   TV LVE+IV++ +  ++ +
Sbjct: 65  FQKDLQHMMYGFGDDPNARNCLGIGCNLCTLCCGTLEPLPETVALVEDIVVEYVTDLVHK 124

Query: 353 GIFNSNLRGSKTITNYDIIYTMRNNTVKLKR---LHDYQQKLDQIDNKSQVNVTTSA 514
               ++ RG K +T  D +Y +R +  KL R   L    ++L Q      VN  T A
Sbjct: 125 AQNVASKRG-KLLTE-DFLYLIRKDVRKLHRATELLSMNEELKQARKAFDVNEETLA 179


>04_03_1031 +
           21850857-21851009,21852229-21852350,21852447-21852891,
           21852981-21853087,21853192-21854524,21854632-21854859,
           21854951-21855181,21855278-21855537,21855651-21856113
          Length = 1113

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +2

Query: 230 NFQKEISNMMHGFGDNPNPNAATVLLVENIVLQQLRSILQEGIFNSNLRGSKTITNYDII 409
           N  KE+ N +H    N         ++ENI L+ L  +LQ G  ++   G     + D++
Sbjct: 688 NLVKEVRNSLHELASNELKEE----ILENIDLEILSQVLQSGSQDTRYLGQILQYSLDMV 743

Query: 410 YTMRNNTVKLKRLHDYQQKLDQIDNKSQVN 499
             +     +      +++ L+++   S+VN
Sbjct: 744 RKLSAPAKEDDMKRSHEKLLNELAASSEVN 773


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,963
Number of Sequences: 37544
Number of extensions: 221359
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)