Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_L11
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-12|CAA90114.2| 121|Caenorhabditis elegans Hypothetical p... 33 0.18
AL021493-7|CAA16389.3| 345|Caenorhabditis elegans Hypothetical ... 33 0.32
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 30 1.7
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 30 1.7
U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class c... 30 2.3
U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class c... 30 2.3
U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class c... 30 2.3
AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein. 30 2.3
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 28 6.9
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 28 6.9
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 28 6.9
AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin s... 28 6.9
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 28 6.9
>Z49909-12|CAA90114.2| 121|Caenorhabditis elegans Hypothetical
protein C14A4.10 protein.
Length = 121
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +2
Query: 236 QKEISNMMHGFGDNPNPNAATVLLVENIVLQQLRSILQEGIFNSNLRGSKTITNYDIIYT 415
++++ +M++GFGD+ P T+ +E IVL ++ + Q + + + DI Y
Sbjct: 30 RRDLRSMVYGFGDDKEPYDKTLDTLEAIVLNYIKELCQLAM---KVGKPDKMALEDIHYL 86
Query: 416 MRNNTVKLKRLHD 454
+R + K R+ D
Sbjct: 87 IRRDPKKFSRVKD 99
>AL021493-7|CAA16389.3| 345|Caenorhabditis elegans Hypothetical
protein Y51A2B.4 protein.
Length = 345
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 392 TNYDIIYTMRNNTVKLKRLHDYQQKLDQIDNKSQVNVTTSAETIYSNIILEDEKD 556
+N+D+I+T + L L ++ L I N SQV V T AE N+I D
Sbjct: 154 SNHDVIFTGHSLGGSLAALSAFETVLSGIRNSSQVKVVTLAEPRTGNLIFAKNFD 208
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 221 EGTNFQKEISNMMHGFGDNPNPNAATV-LLVENIVLQQLRSILQEGIFNSNLRGSKTITN 397
E + KE+ M+H + +P+ V E +V Q LR Q+G ++NL I
Sbjct: 75 EKQSLVKELIKMVHHVAEKNSPDRVFVGTNYERVVDQLLRYAHQKGAISTNLCAEGLIMT 134
Query: 398 YDIIYTMRNNTVKLKRLHDYQQKLD 472
D R K K ++D K+D
Sbjct: 135 SDFRLCSRICQEKWKFINDCIPKID 159
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 221 EGTNFQKEISNMMHGFGDNPNPNAATV-LLVENIVLQQLRSILQEGIFNSNLRGSKTITN 397
E + KE+ M+H + +P+ V E +V Q LR Q+G ++NL I
Sbjct: 75 EKQSLVKELIKMVHHVAEKNSPDRVFVGTNYERVVDQLLRYAHQKGAISTNLCAEGLIMT 134
Query: 398 YDIIYTMRNNTVKLKRLHDYQQKLD 472
D R K K ++D K+D
Sbjct: 135 SDFRLCSRICQEKWKFINDCIPKID 159
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 221 EGTNFQKEISNMMHGFGDNPNPNAATV-LLVENIVLQQLRSILQEGIFNSNLRGSKTITN 397
E + KE+ M+H + +P+ V E +V Q LR Q+G ++NL I
Sbjct: 75 EKQSLVKELIKMVHHVAEKNSPDRVFVGTNYERVVDQLLRYAHQKGAISTNLCAEGLIMT 134
Query: 398 YDIIYTMRNNTVKLKRLHDYQQKLD 472
D R K K ++D K+D
Sbjct: 135 SDFRLCSRICQEKWKFINDCIPKID 159
>U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform c protein.
Length = 667
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 368 NLRGSKTITNYDIIYTMRNNTVKLKRL-HDYQQKLDQIDNKSQVN 499
NLR + +T +DII+T R T+ + + D +Q +D +N Q+N
Sbjct: 380 NLRHANVVTLHDIIHTDRLLTLVFEYVDRDLKQYMDSCNNAMQMN 424
>U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform b protein.
Length = 700
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 368 NLRGSKTITNYDIIYTMRNNTVKLKRL-HDYQQKLDQIDNKSQVN 499
NLR + +T +DII+T R T+ + + D +Q +D +N Q+N
Sbjct: 413 NLRHANVVTLHDIIHTDRLLTLVFEYVDRDLKQYMDSCNNAMQMN 457
>U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform a protein.
Length = 577
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 368 NLRGSKTITNYDIIYTMRNNTVKLKRL-HDYQQKLDQIDNKSQVN 499
NLR + +T +DII+T R T+ + + D +Q +D +N Q+N
Sbjct: 290 NLRHANVVTLHDIIHTDRLLTLVFEYVDRDLKQYMDSCNNAMQMN 334
>AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein.
Length = 577
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 368 NLRGSKTITNYDIIYTMRNNTVKLKRL-HDYQQKLDQIDNKSQVN 499
NLR + +T +DII+T R T+ + + D +Q +D +N Q+N
Sbjct: 290 NLRHANVVTLHDIIHTDRLLTLVFEYVDRDLKQYMDSCNNAMQMN 334
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 284 PNAATVLLVENIVLQQ----LRSILQEGIFNSNLRGSKTI 391
PN T+ + + +QQ LRS L EG+F SN+R + T+
Sbjct: 440 PNRTTISVRRHAYVQQTFGKLRS-LSEGVFRSNMRANSTL 478
>Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical
protein T24D1.1a protein.
Length = 608
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 284 PNAATVLLVENIVLQQ----LRSILQEGIFNSNLRGSKTI 391
PN T+ + + +QQ LRS L EG+F SN+R + T+
Sbjct: 314 PNRTTISVRRHAYVQQTFGKLRS-LSEGVFRSNMRANSTL 352
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 224 GTNFQKEISNMMHGFGDNPNPNAATVL 304
G+NF++E+ N +G NP+ A V+
Sbjct: 502 GSNFRREVLNYRKNYGQQLNPSMAVVI 528
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 284 PNAATVLLVENIVLQQ----LRSILQEGIFNSNLRGSKTI 391
PN T+ + + +QQ LRS L EG+F SN+R + T+
Sbjct: 440 PNRTTISVRRHAYVQQTFGKLRS-LSEGVFRSNMRANSTL 478
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 284 PNAATVLLVENIVLQQ----LRSILQEGIFNSNLRGSKTI 391
PN T+ + + +QQ LRS L EG+F SN+R + T+
Sbjct: 442 PNRTTISVRRHAYVQQTFGKLRS-LSEGVFRSNMRANSTL 480
>AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin
synthase-S protein.
Length = 715
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 284 PNAATVLLVENIVLQQ----LRSILQEGIFNSNLRGSKTI 391
PN T+ + + +QQ LRS L EG+F SN+R + T+
Sbjct: 421 PNRTTISVRRHAYVQQTFGKLRS-LSEGVFRSNMRANSTL 459
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 284 PNAATVLLVENIVLQQ----LRSILQEGIFNSNLRGSKTI 391
PN T+ + + +QQ LRS L EG+F SN+R + T+
Sbjct: 432 PNRTTISVRRHAYVQQTFGKLRS-LSEGVFRSNMRANSTL 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,392
Number of Sequences: 27780
Number of extensions: 228730
Number of successful extensions: 674
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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