Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L10
         (1063 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.21 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.48 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +2

Query: 956  PPXTRXEXXXAXXXSPTPXXPPPPSXXXPXPPPPXP 1063
            PP            +P P  PP P    P PPPP P
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 1007 PXXPPPPSXXXPXPPPPXP 1063
            P  PPPP      PPPP P
Sbjct: 762  PPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 1001 PTPXXPPPPSXXXPXPPPPXP 1063
            P P  PP  +   P PPPP P
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 1001 PTPXXPPPPSXXXPXPPPPXP 1063
            P P  PPP       PPPP P
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 951  SAPXPPAXKXXXXXXXAPLPXXPRRPXXPXXXPPP 1055
            S P PP          AP+P  P  P      PPP
Sbjct: 731  SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 897  PXPXRGPXPAPXPGRXXXSAPXPPAXKXXXXXXXAPLPXXP 1019
            P P   P P P P       P PP           P P  P
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 19/68 (27%), Positives = 21/68 (30%)
 Frame = +3

Query: 816  PXXPPQXXXXCGXXXXXAQTRXAPAHXPXPXRGPXPAPXPGRXXXSAPXPPAXKXXXXXX 995
            P  PP            +    APA  P P   P   P P     + P PPA        
Sbjct: 421  PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA-APAPPPA 479

Query: 996  XAPLPXXP 1019
             AP P  P
Sbjct: 480  PAPAPAAP 487



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 24/84 (28%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
 Frame = +3

Query: 816  PXXPPQXXXXCGXXXXXAQTRXAPAHXPX---PXRGPXPAPXPGRXXXSAPX--PPAXKX 980
            P  PP      G      Q R AP   P    P  G  P P       S P   PPA   
Sbjct: 338  PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397

Query: 981  XXXXXXAPLPXXPRRPXXPXXXPP 1052
                   PL    R    P   PP
Sbjct: 398  RSAPALPPLGNASRTSTPPVPTPP 421



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/53 (24%), Positives = 16/53 (30%)
 Frame = +2

Query: 476 PXGRGXPPKPXXXPGTHXXPASPAXATXXPGXXXPPXPAXDXGXPGXEPXPXA 634
           P     PP P   P +      P+ +   P    PP        P   P P A
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIA 276


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 1007 PXXPPPPSXXXPXPPPPXP 1063
            P  PPPP    P  PPP P
Sbjct: 10   PPPPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 998  SPTPXXPPPPSXXXPXPPPPXP 1063
            +P P  PPP       PPPP P
Sbjct: 8    NPPPPPPPPGFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 1001 PTPXXPPPPSXXXPXPPPPXP 1063
            P P  PP P+     PPPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
 Frame = +2

Query: 851  VPXXQXANPXSP---GAXPXAXEGPXSCAXPRXXXXERPPXTRXEXXXAXXXSPTPXXPP 1021
            VP    A P  P   GA P     P   A P       PP  +         +P+   PP
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPK--PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 1022 PPSXXXPXPPPPXP 1063
             P      PP P P
Sbjct: 1181 VPKPAAGVPPVPPP 1194



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 39/177 (22%), Positives = 42/177 (23%)
 Frame = +1

Query: 532  PRQPXXGHXXPXXPXPPGPXXGPGPXRXRAXAXGPXXRPAXTAEWGGTPXCXXXCXPXAP 711
            P  P      P  P P G    P P         P  +P+  A     P       P AP
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPS-----GIPPVPKPSVAAPPVPKPSVAVPPVP-AP 1117

Query: 712  RXAXXPDXPPXAXPXTXGXRPXAPTXPXQHARXAPPXPRHKXXXXVGXXXXXXXXXXXXX 891
              A     P  A P        AP  P      APP P       V              
Sbjct: 1118 SGAPPVPKPSVAAPPVP-VPSGAPPVPKPSVA-APPVPAPSGAPPVPKPSVAAPPVPAPS 1175

Query: 892  XXXXXRGAXLLRXPPXXXXXAPPXHPRRXXAGXXXQPHSXXPPAALXXXXXPPPPXP 1062
                         PP       P  P+         P S  PP        PP P P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 5.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 1007 PXXPPPPSXXXPXPPPPXP 1063
            P   P  +   P PPPP P
Sbjct: 225  PTYTPKQADPLPAPPPPPP 243



 Score = 21.8 bits (44), Expect(2) = 5.3
 Identities = 12/52 (23%), Positives = 16/52 (30%)
 Frame = +2

Query: 875  PXSPGAXPXAXEGPXSCAXPRXXXXERPPXTRXEXXXAXXXSPTPXXPPPPS 1030
            P + G        P S   P     + P             +P P  PPPP+
Sbjct: 148  PSASGVNAPTVSAPNSMVSP-PPSFQPPSAAAPATSLPSDYNPPPPPPPPPA 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,956
Number of Sequences: 5004
Number of extensions: 26784
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)