Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L06
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     29   0.93 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.6  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   8.6  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 8   FHTIXL*GIP*DLNIFVFNLIASSRAYKMFRLFLYLNILGAFLVTGL 148
           F+ I +      LNI  FNL  S  ++    L  YLN+LG  L+T +
Sbjct: 44  FYFIIISSFSTHLNILYFNLSKSMVSFAQVPLEEYLNLLGHSLLTSI 90


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 404 DGPLKSLSIYLTSPCEEYPHFGMIESYNLTIAADSTLRSS 523
           DGP   + +  T+P  + PHF M  + + +I+A S  RS+
Sbjct: 41  DGPATFVRLKCTNPESKVPHFLMRMAKDSSISATSMFRSA 80


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 329 RDMLRIASPYVNRNAPQQVLDDDTYDGPL 415
           +D+  IAS Y ++  P  +  DD + GPL
Sbjct: 263 KDLQTIASLYDDQQLPSWITKDDLFRGPL 291


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 882  IPLFXXSR*PSECLSWCKSRSRDRLPDDLNPEPFA 778
            +P F     P+  +S+ +  + DRL +D+ P+ FA
Sbjct: 2330 LPFFALEHRPTHVISYTELETNDRLEEDM-PDAFA 2363


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 349 RDSEHVSQYRQTPLDGIRQNRTIVIHYLNFKYITIKFVVR 230
           R  EH+    QT L+ +  N+   ++  NF++I   F  R
Sbjct: 190 RICEHIENGSQTVLEILLMNQNSFLNNFNFEHIKADFAFR 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,752,960
Number of Sequences: 5004
Number of extensions: 78604
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)