Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_L04
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    29   1.2  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    28   2.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.7  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   4.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   6.5  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   8.5  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   8.5  

>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/70 (15%), Positives = 39/70 (55%)
 Frame = +1

Query: 649 NAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISVDDVETRLITKRD 828
           N + L+NG+D+N+    +V++   + K  ++  +   +    + +  +++ +  +  +RD
Sbjct: 284 NTDDLLNGTDDNNIVLREVKVSFENEKIESDDLDKNEEISEGEEYTPIEESKEPITVRRD 343

Query: 829 TPMEVQDNNA 858
           + +++ +++A
Sbjct: 344 SVIQIDESSA 353


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 210 DDIYGYLEEFSKRKPKSIPQELNEY 284
           +D Y  +E+F K  PK+ P+E+ EY
Sbjct: 127 NDHYISIEQFCKNMPKTTPEEVLEY 151


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 745  RNSEPQPCSSDAHISVDDVETRLITKRDTPMEVQDNNAKQLEXAHHLTSNR 897
            R+SE  P SSD ++     E   +   +TP   + N   +L+ +  L S R
Sbjct: 1642 RSSEVLPTSSDTNLDAKRAEEAEMIMIETPPTAEANTGAKLDRSLSLGSRR 1692


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +1

Query: 637 ENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISVDDVETRLI 816
           E+  +++  V+ S+ NSE ++     + + +E+ +  NSE     SD+      +   L 
Sbjct: 116 EDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELE 175

Query: 817 T-----KRDTPMEVQDNNAKQLE 870
                 KR+  ++ + N A + E
Sbjct: 176 NIKQERKREQMLQEEKNRALEQE 198


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 26/118 (22%), Positives = 48/118 (40%)
 Frame = +1

Query: 436 NYDTMKNSLIERLESFTSAPFTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVSTREPG 615
           +Y T  N+L+ER          VQ+I           N  +  +  +  N++        
Sbjct: 541 SYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLV------KQ 594

Query: 616 IVRQPEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHIS 789
           I  +  PEN  N EH +  S  N+  +++  +  VS    + Q +  P P S + +++
Sbjct: 595 IQHRVPPENQSNLEHTITTSSKNTTSSIN-PLTAVS--SNSGQSSGRPGPLSPNLNVT 649


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 673 SDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISVDD 798
           S N+SE   D+    V+ +E +E   + PQ  S    +++DD
Sbjct: 86  SKNDSEITPDINRSKVNPQEYSEFSVASPQTISPSLPLNLDD 127


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 148 LGSNNSYSFSIDFQTETWKMLMIYMVIWKNF 240
           LG+  SYS + DFQ+   KM   + + ++ F
Sbjct: 127 LGTGYSYSLAKDFQSNNEKMANDFSIFFEKF 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,829,684
Number of Sequences: 5004
Number of extensions: 82835
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)