Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_L04
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0063 + 11052916-11053106,11054865-11054945,11055314-110553... 46 3e-05
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 32 0.55
02_03_0262 + 17015383-17015619,17017932-17018879 31 1.7
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 29 5.1
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 9.0
08_02_1325 - 26146775-26147247,26147397-26148579 28 9.0
04_04_1194 - 31643422-31643511,31643695-31643805,31643892-316444... 28 9.0
>06_02_0063 +
11052916-11053106,11054865-11054945,11055314-11055362,
11055468-11055576,11056356-11056408,11056555-11056617,
11057398-11057745
Length = 297
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 493 PFTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVST 603
PFT+QR+CE+L P+ Y ++ K A+EKN+LV ST
Sbjct: 153 PFTLQRLCEILLDPKGTYTKLPKLALALEKNLLVTST 189
>07_03_0572 - 19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 32.3 bits (70), Expect = 0.55
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 535 RKQYNRVDKFMRAIEKNILVVSTREPGIVRQPE--PENGDNAEHLVNGSDNNSEYNVDVE 708
R+++++ + F + ++ + GIV E PENG + NG +NNS ++D
Sbjct: 799 RRRHSKKNGFSYRSQAQNVIRKSNSNGIVENNEHDPENGYAEQFSKNGVENNSHPDIDEN 858
Query: 709 MEDVSWKEATEQRNS 753
+ E T Q S
Sbjct: 859 NNQLGIDEHTSQPGS 873
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 664 VNGSDNNSEYNVDVEMEDVSWKEA-TEQRNSEPQPCSSDAHISVDDVETRLITKRD---- 828
V+ SDNN + ++V+ ED SW + E+ N + QP S D ++ K +
Sbjct: 97 VSDSDNNDDDQMEVD-EDKSWNQVENEEVNDQQQPADHKVDQSGDPAARKMKGKMNESSM 155
Query: 829 TPMEVQD 849
ME+QD
Sbjct: 156 VVMEMQD 162
>11_06_0227 + 21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 526 TYPRKQYNRVDKFMRAIEKNILVVSTREPGIVRQPEPENGDNAEHLVNGSDNNSEYNVDV 705
++P + RV + I + V R G + E N D NS Y
Sbjct: 902 SHPNRPAIRVSRLEEFISLSHFVFQYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQE 961
Query: 706 EMEDVSWKEATEQRNSE---PQPCSSDAHISVDDVET 807
E+ +SW+ +E++ +E P C +D +++ ++ET
Sbjct: 962 ELCLLSWRLVSEEQETESFLPLTCCTD-RLNILEIET 997
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 613 GIVRQPEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISV 792
GI+ E ENG+NA + + N + +DV V +A S+ SDAH+
Sbjct: 262 GIIPDKECENGENANEV---NSNVEDSPLDVAAAPVVSPDAVPNDISQHNGFGSDAHLGA 318
Query: 793 D 795
+
Sbjct: 319 E 319
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 679 NNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISVDDVE-TRLITKRDTPMEVQD 849
NNS++ + ++ + V K +R + + S+ H V+D + RL +R T +++
Sbjct: 278 NNSDFQIRMDRQSVRSKAGAVKRKGKTKELKSNDHKYVEDKDRDRLANERKTKDRIEE 335
>04_04_1194 -
31643422-31643511,31643695-31643805,31643892-31644406,
31644456-31644756
Length = 338
Score = 28.3 bits (60), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 612 RNCASARTRKWRQCGTSR 665
R C S TR WR+CG +
Sbjct: 115 RRCGSGATRSWRRCGKDK 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,049,562
Number of Sequences: 37544
Number of extensions: 465614
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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