Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K24
         (1030 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.3  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 29/143 (20%), Positives = 39/143 (27%), Gaps = 4/143 (2%)
 Frame = +2

Query: 446 PPKXHKXTXKXXXPPXXPRPXIXXXXRKXXNXPPRGXXPXPXXPXXXTXXPPPKXXXXXH 625
           PP  H+       PP    P          + P     P P         PPP       
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 321

Query: 626 PXTAXPTXPXTXXQNQTNXPXKNXQXXPXXXXQ--RXPKQXXHQXGP-XPPXXQXPKKKP 796
                P       ++    P K+ +       +  R P+   H  GP      + PK K 
Sbjct: 322 EHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKE 381

Query: 797 XXQXXXXXXXXNGP-HKEXXKTP 862
             +         GP  KE  K P
Sbjct: 382 HHKGPKDKEHHKGPKDKEHHKGP 404


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 19/89 (21%), Positives = 26/89 (29%)
 Frame = +1

Query: 622 PPXHSXXHPXTXPXPEPNXXPXKKQXXXXXXXXXKXPQTXTPPXRXXPXXXTXPKKKTXP 801
           PP  +   P + P P P   P               P     P +  P   + P      
Sbjct: 139 PPTSAPPRP-SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197

Query: 802 XXRXPPTPGKRAPQGXTXDPQXNTXPTRG 888
             + PP P  +AP   T     +  P  G
Sbjct: 198 PPKVPPPPLSQAPVANTSSRPSSFAPPAG 226


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/82 (21%), Positives = 19/82 (23%)
 Frame = +3

Query: 489  PPXHXPQSXXXGAXXTTXPPEXXTPTPXXPXXKRXXXPXKXXXXXTQXQPXPPXHXPXPR 668
            PP   P S       +T P       P  P       P           P P    P P 
Sbjct: 986  PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPI 1045

Query: 669  TKXTPPXKTXXPXPPXXXKXTP 734
               TPP        P      P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVP 1067


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.135    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,705
Number of Sequences: 5004
Number of extensions: 17053
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)