Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K22
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    77   5e-15
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.23 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   8.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 76.6 bits (180), Expect = 5e-15
 Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 6/182 (3%)
 Frame = +3

Query: 294 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 458
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 459 LLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPK 635
           LLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K
Sbjct: 60  LLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK 118

Query: 636 HFNDDYFXXXXXXXXXXXXXXXGDDIFATKKEKYVPSEQRKTDQXTVDEAVIKPSEPXPT 815
            F   YF                +  FA    K     +R  DQ  VD  ++   +  P 
Sbjct: 119 -FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN 173

Query: 816 RR 821
            +
Sbjct: 174 MK 175


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 502 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 368
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +1

Query: 631 QNTSMMITSRRIRSASNVQSNAKXVMTSLPQKKRNTFHLSSAKPIR 768
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 601  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKXVMTSLPQKKRNTFHLSSA 756
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTA 939


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,428
Number of Sequences: 5004
Number of extensions: 68176
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)