Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K19
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    28   1.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   2.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.7  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   3.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   4.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   4.8  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   8.4  

>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 177 LKSKXKFCPSSKNVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 353
           L+ K K+ P  K     N+  +   I      E  + N+T ++A+EE  K+     +PK
Sbjct: 239 LRQKNKYLPKIKKWIDENSPGDTL-IPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 675  VNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 568
            ++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 928  ISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 177 LKSKXKFCPSSKNVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKN 356
           LK K +   S K V  LN   +     +      ++D+  +KKA  + +   ++   PKN
Sbjct: 112 LKGKPQLVKSDKGVLPLNKQSDILNSYERVLSNASVDSALDKKAEVDIIPFDKSVMEPKN 171

Query: 357 LEFS 368
           + F+
Sbjct: 172 ITFN 175


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 207 SKNVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 314
           SK+ S       YYK+ K Y  + N D     K VE
Sbjct: 94  SKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 204 SSKNVSQLNTDDEYYKIGKDYDIEMNMDN 290
           S++NV Q+N +DEY +   + D E  +DN
Sbjct: 53  STQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 570 YFIRSRNNETRGNQSAG*QRCRRHTRID 487
           Y + S+NN  +  Q+A   +CR  T +D
Sbjct: 99  YILSSKNNPNQNPQAAALTKCREQTFVD 126


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 645 INEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETRGNQSAG*Q 514
           + E +   C V      ++++ ++ Y + S +N  +GN S G Q
Sbjct: 253 VAETMTLCCIVTIFYDKNVNRQWKQYILTSVSNMDKGNPSGGSQ 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,341
Number of Sequences: 5004
Number of extensions: 62447
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)