Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K18
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.77 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.77 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.77 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   4.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.4  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 980 PPPPPPPPP 954
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 980 PPPPPPPPP 954
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 980 PPPPPPPPP 954
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 980 PPPPPPPPP 954
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 747 PPPPPPPXXXXGXG 706
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 980 PPPPPPPP 957
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 977 PPPPPPPP 954
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 747 PPPPPPPXXXXGXGG 703
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 980 PPPPPPPPP 954
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 747 PPPPPPPXXXXGXGGG 700
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 2.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 980 PPPPPPPP 957
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 977 PPPPPPPP 954
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 747 PPPPPPP 727
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 980 PPPPPPP 960
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 977 PPPPPPP 957
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 747 PPPPPPP 727
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.4 bits (43), Expect(2) = 4.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 744 PPPPPPXXXXGXG 706
           PPPPPP      G
Sbjct: 337 PPPPPPPRSNAAG 349



 Score = 21.4 bits (43), Expect(2) = 4.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 744 PPPPPPXXXXGXG 706
           PPPPPP      G
Sbjct: 361 PPPPPPRSAPSTG 373



 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 974 PPPPPP 957
           PPPPPP
Sbjct: 361 PPPPPP 366



 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 971 PPPPPP 954
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 980 PPPPPPPP 957
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 977 PPPPPPPP 954
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 980  PPPPPPPP 957
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 977  PPPPPPPP 954
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 980 PPPPPPPP 957
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 977 PPPPPPPP 954
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.159    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,766
Number of Sequences: 5004
Number of extensions: 14769
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)