Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K15
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   1.2  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   2.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.8  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +2

Query: 605  FANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCXAT 781
            +A   PS       ++L   +L D ++ +  +++  L+GT +DE  SY R+ +++   T
Sbjct: 1579 WATTCPSRRLACNSFQLFRSLLPDFDARMLLEIISRLVGTISDE-TSYLRDYSVEILRT 1636


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 476 RLYNNLEPNSPLRYHVYYHVIELAARV 556
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 620  PSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLG 721
            P  +++Q+ YR  H+VL+   ++ +  V  +LLG
Sbjct: 1027 PGKQRVQRTYRRTHEVLEPVGAKTSETVFNDLLG 1060


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 551  RVGFVR---EVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNS 685
            R+GF++   E     E++R+E+         +   YRLL  +LKD++S
Sbjct: 1765 RIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHYRLLEYLLKDESS 1812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,670
Number of Sequences: 5004
Number of extensions: 63188
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)