Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K14
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.044
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 498 PXXXXPPPPXGGGFFXXXKXPPPPPXXXXKK 406
           P    PPPP   GF    + PPPPP    KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPP 516
           PPPP   G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 497 PXXXXPPPXGGGGFFXXKXPPPPPPXXXXKK 405
           P    PPP   G     + PPPPPP    K+
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPP 516
           PPPP  G       PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPP 516
           PPPP G        PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +3

Query: 798 PXPPPXXXXXXXXXXXXXXXXXXSPXGXGGGPXPPPXXKXGGGPPP 935
           P PPP                  +P   G  P PPP    G GPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPP 516
           PPPP   G    G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 506 GGXPXXXXPPPXGGGGFFXXKXPPPPPPXXXXKKXGGXXXXP 381
           GG P    PP   G G      PPPPPP       G     P
Sbjct: 759 GGPPPPPPPPGVAGAG-----PPPPPPPPPAVSAGGSRYYAP 795



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 934 GGGPPPXXXXG-GGXGPPPXP 875
           GG PPP    G  G GPPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPPKXXXG 531
           PPPP   G      PPPPP    G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 795 PPXPPPXXXXXXXXXXXXXXXXXXSPXGXGGGPXPPPXXKXGGGPPP 935
           PP PPP                     G    P PPP     G PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPP 516
           PPPP G        PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 460 PPPPXGGGXXXXGXPPPPP 516
           PPPP  G       PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 424 GGGGGGFXXXKKPPPPXGGGXXXXG 498
           GGG GGF      PPP  GG    G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFG 211



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +1

Query: 373 GXXGXXXXPPXFFXXXXGGGGGGFXXXKKPPPPXGGGXXXXGXP 504
           G  G     P  F    GG GGG       P   GGG    G P
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 479 PPXGGGGFFXXKXPPPPPP 423
           PP G G       PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 466 PPXGGGXXXXGXPPPPP 516
           PP G G      PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPP 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,432
Number of Sequences: 5004
Number of extensions: 26662
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)