Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K12
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    83   6e-17
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    83   6e-17
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   9.4  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 83.0 bits (196), Expect = 6e-17
 Identities = 39/74 (52%), Positives = 47/74 (63%)
 Frame = +2

Query: 257 MGAYXYIQXLYXKKLTDXMRXXSXVRVWQYRQLTRMHXXXXXXXXDKARXLGYRAKQGYV 436
           MGAY Y++ L  KK +D     S VR W+YRQ+  +H        DKAR LGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 437 VXXIRVPXGGRKRP 478
           +  IRV  GGRKRP
Sbjct: 61  IYRIRVRRGGRKRP 74



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 489 GAXYGKPKSHGVNHL 533
           G  YGKP   GVNHL
Sbjct: 78  GQTYGKPVHQGVNHL 92


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 83.0 bits (196), Expect = 6e-17
 Identities = 39/74 (52%), Positives = 47/74 (63%)
 Frame = +2

Query: 257 MGAYXYIQXLYXKKLTDXMRXXSXVRVWQYRQLTRMHXXXXXXXXDKARXLGYRAKQGYV 436
           MGAY Y++ L  KK +D     S VR W+YRQ+  +H        DKAR LGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 437 VXXIRVPXGGRKRP 478
           +  IRV  GGRKRP
Sbjct: 61  IYRIRVRRGGRKRP 74



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 489 GAXYGKPKSHGVNHL 533
           G  YGKP   GVNHL
Sbjct: 78  GQTYGKPVHQGVNHL 92


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 450  VCHXVAASVXLLIGAXYGKPKSHGVNHLXPTSQPSIXLLMIVL 578
            +   V     L+IG+ Y  P+SH  + +  TS  +I ++  +L
Sbjct: 933  ILQCVCCRFNLIIGSEYYVPQSHQSDSVNLTSNDAIKIIPFIL 975


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,991
Number of Sequences: 5004
Number of extensions: 32861
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)