Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K12
         (988 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    83   3e-16

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 37/74 (50%), Positives = 48/74 (64%)
 Frame = +2

Query: 257 MGAYXYIQXLYXKKLTDXMRXXSXVRVWQYRQLTRMHXXXXXXXXDKARXLGYRAKQGYV 436
           MGAY Y+Q ++ KK +D +R    +R W YRQL+ +H        +KAR LGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 437 VXXIRVPXGGRKRP 478
           V  +RV  G RKRP
Sbjct: 61  VYRVRVRRGNRKRP 74



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 489 GAXYGKPKSHGVNHL 533
           G  YGKPK+HGVN L
Sbjct: 78  GQTYGKPKTHGVNEL 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,901
Number of Sequences: 27780
Number of extensions: 205415
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)