Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_K08
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.24 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   6.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +3

Query: 81  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 260
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 261 KGSIIQNVVNNLIIDKRRNTMEYCYKL 341
              +  N+    I      TMEY  +L
Sbjct: 58  PAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +3

Query: 81  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 260
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 261 KGSIIQNVVNNLIIDKRRNTMEYCYKL 341
              +  N+    I       MEY  +L
Sbjct: 58  PAIVRVNLFVRSIATISDIKMEYSVQL 84


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 856 PRVDVRRPATSXSCPTALR 800
           PR++ + P  S +CP  L+
Sbjct: 51  PRINSKSPLLSCACPDGLK 69


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 856 PRVDVRRPATSXSCPTALR 800
           PR++ + P  S +CP  L+
Sbjct: 51  PRINSKSPLLSCACPDGLK 69


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 157 ADSSTTPALAASMHIANTTRSFILLGAFQ 71
           A+   +  +A  +HI+N T SF L G F+
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFE 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,285
Number of Sequences: 438
Number of extensions: 5061
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)