Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J18
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   2.1  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.7  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   4.9  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   8.5  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 654  NVANKIYIKEGDYELXPKLKKDAVEVFDADFEKV 755
            + ++  Y+K+G +EL   +  D   V D DF+ V
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDV 1289


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 357 TKLWQISSIIINPLVYYDSSIIFTSTEENKIL 262
           +K W  +S++++PL +  S I+F      KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 678  KEGDYELXPKLKKDAVEVFDADFEKVD---FDNGAAAAGLITN 797
            K+G   L PK+  + V  + +++EK+D   FD+     GL+++
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSS 1319


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 381 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 542
           I++P+L+        +I K++A+  NEL       S PL AE+     ++G  D
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 399 SMDSKALSSAITKFSAKFCNELDKKKNVVS 488
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,530
Number of Sequences: 5004
Number of extensions: 63270
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)