Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J18
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0011 - 7337618-7338496,7338596-7338991                           29   5.1  
02_04_0632 + 24614659-24615528,24615636-24616133                       29   5.1  
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    29   5.1  
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    29   6.7  
11_02_0012 - 7346282-7347136,7347234-7347593                           28   8.9  
04_04_0619 + 26652923-26653267,26653440-26654273                       28   8.9  
01_06_0887 + 32733300-32734565                                         28   8.9  

>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 462 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 596
           +   KN+V SP S    LAL+  G      +ELL  LG    D +
Sbjct: 27  VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL 71


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -1

Query: 586 SSVIPRLVNSSSCAGSVVPKVINASKYSA----DNGDD 485
           ++V P L+     +G+  PK+ NAS Y+A    DNGDD
Sbjct: 71  TAVDPSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108


>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 643 PFIDF--NFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNG 491
           PF+ F   +DD   +++R V+S  I      +SCAGSV+ + ++ +K   D G
Sbjct: 84  PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135


>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 372 LLEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA 548
           L+E+    LSM +K  SSA+  F+ KF + L           S+E     +  GT T PA
Sbjct: 237 LVEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPA 295

Query: 549 -HEELLTSLG 575
            H+ L++SLG
Sbjct: 296 LHQFLVSSLG 305


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 465 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 596
           +  +NVV SP+S    LAL+  G      +EL+  LG    D +
Sbjct: 28  NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71


>04_04_0619 + 26652923-26653267,26653440-26654273
          Length = 392

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 28/112 (25%), Positives = 42/112 (37%)
 Frame = +3

Query: 462 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTIRXXXXXXXXXXXXIK 641
           + ++ N + SPL     LAL+  GT      +LL  LG      +               
Sbjct: 16  ITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP 75

Query: 642 GVTFNVANKIYIKEGDYELXPKLKKDAVEVFDADFEKVDFDNGAAAAGLITN 797
            ++F  A  I++ +    L P+ +  A     A    VDF N A AA    N
Sbjct: 76  QLSF--AAGIFV-DRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVN 124


>01_06_0887 + 32733300-32734565
          Length = 421

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 648 TFNVANKIYIKEGDYELXPKLKK--DAVEVFDADFEKVDFDNGAAAAGLITN 797
           TFN+ N+I ++    EL P+ K     + ++ A      F +G   AGLI +
Sbjct: 123 TFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLIND 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,888,666
Number of Sequences: 37544
Number of extensions: 349599
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)