Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J12
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    29   0.90 
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   1.8  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.8  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   8.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   8.4  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   8.4  

>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 471 DLHLYSFVFIFHIHMINLK-FGLMLYSSVEYILQLHLKALAVVNVLYLLII 620
           D++   ++ IF + +I +  FG+ ++  VE++L L +K +A V  + L II
Sbjct: 186 DVNCAVWISIFLVVVIGINLFGVRVFGEVEFVLAL-IKVVATVGFIILAII 235


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 228 TCPSCHASVMTKITTKASTKTHI 296
           TCPSCH S  +++   + T + I
Sbjct: 228 TCPSCHYSTNSEMLDLSKTSSDI 250



 Score = 21.8 bits (44), Expect(2) = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 369 NSDHYCPNCNAYIGTYT 419
           +SD  CPNCN  + + T
Sbjct: 247 SSDISCPNCNDQLTSTT 263


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 181 FDRSRWSQSVQIQHR*PVHRATR 249
           F R+ W++ V  Q R P+HRA R
Sbjct: 181 FQRNNWNRVVAFQTRNPMHRAHR 203


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 345 PYCMDSCMNSDHYCPNCNAYIGT 413
           PY +++C N   Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 266 DFGHDRRVARWTGYLCWIWTDCDHLDRSKL 177
           D    R+ A W  Y    W DC H   +++
Sbjct: 590 DGNRRRKAAFWFAYSAGFWRDCGHCKMAEI 619


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 290 SHHRTDPVFVHVFALRMSAILHGLVHEFGPLLSKLQRLH 406
           SHH  D VF  V+ +   A+ H +  +   +LS    LH
Sbjct: 773 SHHLDDIVFDRVYNVSTKALFHIVFGDRSTVLSGAYNLH 811


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -2

Query: 827 VKYVIIYQNCKSEKNLITRL 768
           ++ V I++NCK+EKNL +++
Sbjct: 715 LQLVKIFENCKAEKNLSSKV 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,857
Number of Sequences: 5004
Number of extensions: 65790
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)