Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_J09
         (1269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   9.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -1

Query: 1269 PPPXPPPXX------PLPPAXXTXSPNPPXHTXXSSXXPPXXLDS 1153
            PPP PPP        PLPP   +  P PP  +  S+   P  L S
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 789 PRPPXELRXTXESXVFPXXPXSXLXXGPPXXPPP 688
           P PP  +  T      P  P + +  GPP  PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -1

Query: 813 PXPLPXXIPRPPXELRXTXESXVFPXXPXSXLXXGPPXXPPP 688
           P P P  IP PP            P  P      GPP  PPP
Sbjct: 742 PTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -1

Query: 1266 PPXPPPXXPLPPAXXTXSPNPPXHTXXSSXXPPXXLDSXPPT 1141
            PP P P    PP     S  P   T  SS   P    S  PT
Sbjct: 1227 PPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 1266 PPXPPPXXPLPPAXXTXSPNPPXHTXXSSXXPPXXLDSXP 1147
            PP PP   P PP+       PP     S+  PP    S P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP-----SAPPPPLPASSAP 1741


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
            Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = -1

Query: 1269 PPPXPPPXXPLP-PAXXTXSPNPPXHTXXSSXXPPXXL 1159
            P   P P  P P PA     P PP  +  S   PP  L
Sbjct: 725  PQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPL 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,771
Number of Sequences: 5004
Number of extensions: 16618
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)